BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZB08RM1.SCF screened BAC_end
         (856 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig899                                                          593   e-169

>3x_Contig899 
          Length = 3445

 Score =  593 bits (299), Expect = e-169
 Identities = 329/339 (97%)
 Strand = Plus / Plus

                                                                       
Query: 46  tgatcagatttacgaaagtaccaaatctggggtatagaacgttatgcaaaacaggtaatc 105
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgatcagatttacgaaagtaccaaatctggggtatagaacgttatgcaaaacaggtaatc 450

                                                                       
Query: 106 ctttgtatttcaatttcattaactttctttcaatcaatttaacttctggtgtgaagatat 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctttgtatttcaatttcattaactttctttcaatcaatttaacttctggtgtgaagatat 510

                                                                       
Query: 166 tcacctcgggaaatattaccaaattctcaggcccataaaacttcttaatctttgataccg 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcacctcgggaaatattaccaaattctcaggcccataaaacttcttaatctttgataccg 570

                                                                       
Query: 226 aaacgttgtcattctcatcatgcctgaatattgtccaaaaatgcttaaaactgggatact 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aaacgttgtcattctcatcatgcctgaatattgtccaaaaatgcttaaaactgggatact 630

                                                                       
Query: 286 tcattaaacgagtccaacctgcgaaaattacattttcagcttccgactgggattgaatca 345
           ||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||
Sbjct: 631 tcattaaacgagtccaacctgcgaaaattacattttcagctccgaactgggattgaatca 690

                                                  
Query: 346 aagtttaatcgttaattaaccattggttgcttaatatta 384
           |||| |||||| ||||| | |  |||||||||| |||||
Sbjct: 691 aagtataatcgataattgatctatggttgcttagtatta 729


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,320
Number of Sequences: 1807
Number of extensions: 38320
Number of successful extensions: 686
Number of sequences better than 1.0e-20: 1
length of query: 856
length of database: 10,358,551
effective HSP length: 16
effective length of query: 840
effective length of database: 10,329,639
effective search space: 8676896760
effective search space used: 8676896760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)