BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC7ZB08RM1.SCF screened BAC_end (856 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig899 593 e-169 >3x_Contig899 Length = 3445 Score = 593 bits (299), Expect = e-169 Identities = 329/339 (97%) Strand = Plus / Plus Query: 46 tgatcagatttacgaaagtaccaaatctggggtatagaacgttatgcaaaacaggtaatc 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 tgatcagatttacgaaagtaccaaatctggggtatagaacgttatgcaaaacaggtaatc 450 Query: 106 ctttgtatttcaatttcattaactttctttcaatcaatttaacttctggtgtgaagatat 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ctttgtatttcaatttcattaactttctttcaatcaatttaacttctggtgtgaagatat 510 Query: 166 tcacctcgggaaatattaccaaattctcaggcccataaaacttcttaatctttgataccg 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 tcacctcgggaaatattaccaaattctcaggcccataaaacttcttaatctttgataccg 570 Query: 226 aaacgttgtcattctcatcatgcctgaatattgtccaaaaatgcttaaaactgggatact 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 aaacgttgtcattctcatcatgcctgaatattgtccaaaaatgcttaaaactgggatact 630 Query: 286 tcattaaacgagtccaacctgcgaaaattacattttcagcttccgactgggattgaatca 345 ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct: 631 tcattaaacgagtccaacctgcgaaaattacattttcagctccgaactgggattgaatca 690 Query: 346 aagtttaatcgttaattaaccattggttgcttaatatta 384 |||| |||||| ||||| | | |||||||||| ||||| Sbjct: 691 aagtataatcgataattgatctatggttgcttagtatta 729 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 38,320 Number of Sequences: 1807 Number of extensions: 38320 Number of successful extensions: 686 Number of sequences better than 1.0e-20: 1 length of query: 856 length of database: 10,358,551 effective HSP length: 16 effective length of query: 840 effective length of database: 10,329,639 effective search space: 8676896760 effective search space used: 8676896760 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)