BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB09FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig580 1505 0.0
>3x_Contig580
Length = 2708
Score = 1505 bits (759), Expect = 0.0
Identities = 821/834 (98%), Gaps = 6/834 (0%)
Strand = Plus / Minus
Query: 82 cgtttagtttctgaattcttttatctgtgattgccaaggatttcttttggagtgtcccta 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 cgtttagtttctgaattcttttatctgtgattgccaaggatttcttttggagtgtcccta 1480
Query: 142 acaagctggcaagtttgaagttcaatggtaagaagcaaataatcattgcactaccaacta 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 acaagctggcaagtttgaagttcaatggtaagaagcaaataatcattgcactaccaacta 1420
Query: 202 aagcagacctgcttattaaccgatataaaaggaataatgcaacaatggtcatgatgatcg 261
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 aagcagaccagcctattaaccgatataaaaggaataatgcaacaatggtcatgatgatcg 1360
Query: 262 cctctataaaggagtgcaaatacgcacatatttcggatactttgaaagcatccaccgcca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 cctctataaaggagtgcaaatacgcacatatttcggatactttgaaagcatccaccgcca 1300
Query: 322 tcaaattaatgatagcaccaagatttgcagtggttgctgattcttcatctccatcaacgt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 tcaaattaatgatagcaccaagatttgcagtggttgctgattcttcatctccatcaacgt 1240
Query: 382 gttgtttgtcatttaattcctgtggatcaacgacatcagttggctccttagtggaatttg 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 gttgtttgtcatttaattcctgtggatcaacgacatcagttggctccttagtggaatttg 1180
Query: 442 gagaaatttttcttctcaaagccttggagtagatttcagaaattatgatagccttcattc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 gagaaatttttcttctcaaagccttggagtagatttcagaaattatgatagccttcattc 1120
Query: 502 tgatacaaacccttctccctaaaaatagcgcctgagcagcacatatggcagttaaaattc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 tgatacaaacccttctccctaaaaatagcgcctgagcagcacatatggcagttaaaattc 1060
Query: 562 tggcaaggaacataagaaaaatatacatccaagccaaatttaatggagcagttgattgat 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 tggcaaggaacataagaaaaatatacatccaagccaaatttaatggagcagttgattgat 1000
Query: 622 cttcaacatactccaaaatacgtctgagcaacattgttggaacaaaactaataactgacg 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 cttcaacatactccaaaatacgtctgagcaacattgttggaacaaaactaataactgacg 940
Query: 682 aaattgttgcccaggcaccttgaatggcgataaatttcatgaaaaagtggattaagttaa 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aaattgttgcccaggcaccttgaatggcgataaatttcatgaaaaagtggattaagttaa 880
Query: 742 atgaaaatgtcctagacttggttttattctgaac-aaatgattgaatctctttattac-a 799
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 879 atgaaaatgtcctagacttggttttattctgaacaaaatgattgaatctctttattacga 820
Query: 800 gaatgggatagtctttcaccattagacccc-aacatctttca-ttcgatataaatttgat 857
|||||| |||||||| |||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct: 819 gaatggaatagtcttccaccattagaccccaaacatctttcatttcgatataattttgat 760
Query: 858 gcgctttccaaa-naatttatctacccatgccccagttgatataacttgcaatc 910
|||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct: 759 gcgctttccaaagaaatttatctacccatgcccaag-tgatataacttgcaatc 707
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7062
Number of Sequences: 1807
Number of extensions: 7062
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)