BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB09RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig324 658 0.0
3x_Contig735 285 8e-77
>3x_Contig324
Length = 1753
Score = 658 bits (332), Expect = 0.0
Identities = 347/352 (98%)
Strand = Plus / Minus
Query: 50 ttgtaagtgctgaagaatgttttggtgtacaaatcattgtccatgcataatttaacaatt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtaagtgctgaagaatgttttggtgtacaaatcattgtccatgcataatttaacaatt 385
Query: 110 gcgtagtccaagagaccagctccatttccctcgttatactttccctgatggtttttgaaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcgtagtccaagagaccagctccatttccctcgttatactttccctgatggtttttgaaa 325
Query: 170 aaagccgaaatatcatttatacttaccagcttcgagaagactgaagaagtcagaaccagg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagccgaaatatcatttatacttaccagcttcgagaagactgaagaagtcagaaccagg 265
Query: 230 acatcgaacaatttttctagagaggcagatttcaatacgacattaataacagcctcatcc 289
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 264 acatcgaacaatttttctagagaggcagatttcaatacgacataaataacagcctcatcc 205
Query: 290 caactatcggttgtcttggagatgtttttgaaaaagtccatgttttctacaccaacgctt 349
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 caactatcggatgtctaggagatgtttttgaaaaagtccatgttttctacaccaacgctt 145
Query: 350 aatctattaataacttcttgagaatcccgggaggattgaacagagaatcttt 401
|||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 144 aatctattaataacttcttgagaatcccgggaggattgaaaaaagaatcttt 93
>3x_Contig735
Length = 3283
Score = 285 bits (144), Expect = 8e-77
Identities = 234/258 (90%), Gaps = 5/258 (1%)
Strand = Plus / Minus
Query: 525 acttaagaagcatttgtttggtttgactgctttgtggacagttctctaaccaccggttta 584
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct: 3263 acttaagaagcatttgtttg-tttgactgctttgtggacagttctctaaccacgggttca 3205
Query: 585 tcaatccggtcaataccagttatcaacgatttatcttcagggctaatgcctaatggtnca 644
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 3204 tcaatccggtcaataccggttatcaacgatttatcttcagggctaatgcctaagggtcca 3145
Query: 645 ctaacagattgcgttttaccggacctgctgaggttgtttgttttgaccgatgactggctg 704
||||||||| ||||||||||||||||||||||| ||||||||| || ||||||| |||
Sbjct: 3144 ctaacagatagcgttttaccggacctgctgagggtgtttgtttgaacgaatgactgcctg 3085
Query: 705 tt-tttttggcacctgca-nacctatgaagccagtctga-aaaaaagaagatagtcta-a 760
|| |||| |||||||||| |||||||| | |||||||| | |||||| |||||||| |
Sbjct: 3084 ttattttgggcacctgcagcacctatgagggcagtctgagagaaaagagaatagtctaga 3025
Query: 761 aacagctgattgaacaaa 778
||||||||||||||||||
Sbjct: 3024 aacagctgattgaacaaa 3007
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6842
Number of Sequences: 1807
Number of extensions: 6842
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)