BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB10FM1.SCF screened BAC_end
(1213 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1554 232 1e-60
>3x_Contig1554
Length = 8957
Score = 232 bits (117), Expect = 1e-60
Identities = 123/125 (98%)
Strand = Plus / Minus
Query: 108 gatgggtcacaaagttagagttctaccaggtgagaagactttgcgtttgcattatgccaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2147 gatgggtcacaaagttagagttctaccaggtgagaagactttgcgtttgcattatgccaa 2088
Query: 168 tactggtgcttacaacgccttttttgatggtgatgaaatgaatatgcacttcccacaaaa 227
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2087 tactggtgcttacaacgccgattttgatggtgatgaaatgaatatgcacttcccacaaaa 2028
Query: 228 cgaaa 232
|||||
Sbjct: 2027 cgaaa 2023
Score = 224 bits (113), Expect = 3e-58
Identities = 143/153 (93%)
Strand = Plus / Minus
Query: 243 tgaagcattgaatctagccaatactgactctcaatacttgacaccaacatccggttctcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 tgaagcattgaatctagccaatactgactctcaatacttgacaccaacatccggttctcc 1953
Query: 303 agtaagaggtcttatccaagatcacatttctgcatgtgtttggttaactagctttgactc 362
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 1952 agtaagaggtcttatccaagatcacatttctgcaggtgtttggttaactagcaaagactc 1893
Query: 363 actttttactatataacaagatcggcagtatat 395
| |||| |||| | ||||| ||| |||||||||
Sbjct: 1892 atttttcactagagaacaatatcagcagtatat 1860
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,031
Number of Sequences: 1807
Number of extensions: 23031
Number of successful extensions: 1477
Number of sequences better than 1.0e-20: 1
length of query: 1213
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1197
effective length of database: 10,329,639
effective search space: 12364577883
effective search space used: 12364577883
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)