BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB10RM1.SCF screened BAC_end
(881 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1370 1312 0.0
>3x_Contig1370
Length = 5848
Score = 1312 bits (662), Expect = 0.0
Identities = 718/734 (97%), Gaps = 2/734 (0%)
Strand = Plus / Minus
Query: 48 accaatagcacctggttgaccctttgcaagctgtgatatgactggcttccagctggaaga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2354 accaatagcacctggttgaccctttgcaagctgtgatatgactggcttccagctggaaga 2295
Query: 108 tattctatttgttaaaagtttattgaaaaagttcgccagttgtatggagtcaatgtttga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2294 tattctatttgttaaaagtttattgaaaaagttcgccagttgtatggagtcaatgtttga 2235
Query: 168 agctgacccatttcccaactgccaatcgtcatagcccctcacaacatcgttataggtctg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2234 agctgacccatttcccaactgccaatcgtcatagcccctcacaacatcgttataggtctg 2175
Query: 228 gatattggacgtgaaatggtttgtatcgttcaagctggtcgatagctccaatgcatataa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2174 gatattggacgtgaaatggtttgtatcgttcaagctggtcgatagctccaatgcatataa 2115
Query: 288 tacccattcacctttactgttgacatagacattacctaaacacaatgcaccgaaaagtga 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2114 tacccattcacctttactgttgacatagacattacctaaacacaatgcaccgaaaagtga 2055
Query: 348 cttgccttgttgatgtaaaacgttcaacgtcagtgctatttcatagataccaagtttcaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2054 cttgccttgttgatgtaaaacgttcaacgtcagtgctatttcatagataccaagtttcaa 1995
Query: 408 agcattttcattgaagttaaaataatccaatgagttaagagcagtaattctttcggtgat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1994 agcattttcattgaagttaaaataatccaatgagttaagagcagtaattctttcggtgat 1935
Query: 468 gatgtaaactttatctgtggatggttcaatgacatctaatactttcgctagacccggaag 527
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1934 gatgtagactttatctgtggatggttcaatgacatctaatactttcgctagacccggaag 1875
Query: 528 cttaaggatcttacatttcaaaacatggttcttt-aaaaaacagctggtacttggtcagt 586
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1874 cttaaggatcttacatttcaaaacatggttctttaaaaaaacagctggtacttggtcagt 1815
Query: 587 tttatacgtatgaatggtaacaggtaatgaatctgatttcctgggttcacttttcagcgt 646
|||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct: 1814 tttatacgtatgaatggtaacaggtaatgaatctgatttcctggttccactttccagcgt 1755
Query: 647 accaaatggcatattcacaacagatacaccattcgtagtaaaaggcaatgggaaagtaga 706
|||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||
Sbjct: 1754 accaaatggcatattcacaacagatacaccatcggtagtaaaaggcaattgaaagttaga 1695
Query: 707 tatcgatttggaaatgtaatccatattttacttgtacgcacaaaaaccttttaaaacgca 766
|||||||||| |||||||||||||| |||||||||||||||||||||| |||| | ||||
Sbjct: 1694 tatcgatttgaaaatgtaatccata-tttacttgtacgcacaaaaaccctttagagcgca 1636
Query: 767 cttagcaaagccct 780
||||||||||||||
Sbjct: 1635 cttagcaaagccct 1622
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6339
Number of Sequences: 1807
Number of extensions: 6339
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 881
length of database: 10,358,551
effective HSP length: 16
effective length of query: 865
effective length of database: 10,329,639
effective search space: 8935137735
effective search space used: 8935137735
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)