BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB11FM1.SCF screened BAC_end
(887 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig900 1473 0.0
>3x_Contig900
Length = 3046
Score = 1473 bits (743), Expect = 0.0
Identities = 794/803 (98%), Gaps = 6/803 (0%)
Strand = Plus / Minus
Query: 87 tgtaaaccggtgcaaatatacgagagccctgtacggagtgtcaatatgtggatatctatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 tgtaaaccggtgcaaatatacgagagccctgtacggagtgtcaatatgtggatatctatt 1320
Query: 147 tgtcaggtaaattaatcctcaactgcactttaattcggactttcaatgtctgcgtataat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 tgtcaggtaaattaatcctcaactgcactttaattcggactttcaatgtctgcgtataat 1260
Query: 207 gtgctctttttttttcaattggtcatttcaccaaagctcataccatacaaaacctagtat 266
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 gtgctctttgatcttcaattggtcatttcaccaaagctcataccatacaaaacctagtat 1200
Query: 267 gagattccaagaagatttcggtacaacttgaaaaatttgtatacaacacccagacactac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 gagattccaagaagatttcggtacaacttgaaaaatttgtatacaacacccagacactac 1140
Query: 327 actataaacatacttcaaatatgtaaagaatactctccaaaggcagccgtaaaaggatgt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 actataaacatacttcaaatatgtaaagaatactctccaaaggcagccgtaaaaggatgt 1080
Query: 387 catatatctaggtgtggccagctcttatgaactactgagttgttaaactgaataataatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 catatatctaggtgtggccagctcttatgaactactgagttgttaaactgaataataatc 1020
Query: 447 taacagtactgtacgtattctcttttattcgagaattgatattttgcctattttttctca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 taacagtactgtacgtattctcttttattcgagaattgatattttgcctattttttctca 960
Query: 507 attctttaaagatactttaactctgactagcttattttctctgaaaaatttctagctcat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 attctttaaagatactttaactctgactagcttattttctctgaaaaatttctagctcat 900
Query: 567 ctcatctcatctgaacccatcgcttgggtatactacaaacattgtagaaggcggatatct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ctcatctcatctgaacccatcgcttgggtatactacaaacattgtagaaggcggatatct 840
Query: 627 aatactgtcaactagtcataataggtataatcttgacaagtaacgagaagaagaatcacg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 aatactgtcaactagtcataataggtataatcttgacaagtaacgagaagaagaatcacg 780
Query: 687 tccatcagcaatatggcaaaggtagagaagaaaaaattcactaaggagtacagaactgaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 779 tccatcagcaatatggcaaaggtagagaagaaaaaattcactaaggagtacag-actgaa 721
Query: 747 -gagattcaaaggaatctaactaagaaagctagattaaagaa-gaatacttgaaagtctt 804
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 720 ggagattcaaaggaatctaactaagaaagctagattaaagaaggaatacttgaaagtctt 661
Query: 805 aaa-gatgaa-ggtacagcattccagag-aaccacaatacgagaaacatgatagatcttc 861
||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 660 aaaggatgaagggtacagcattccagagaaaccacaatacgagaaacatgatagatcttc 601
Query: 862 tgtagaggctaagaaagcattga 884
|||||||||||||||||||||||
Sbjct: 600 tgtagaggctaagaaagcattga 578
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8469
Number of Sequences: 1807
Number of extensions: 8469
Number of successful extensions: 330
Number of sequences better than 1.0e-20: 1
length of query: 887
length of database: 10,358,551
effective HSP length: 16
effective length of query: 871
effective length of database: 10,329,639
effective search space: 8997115569
effective search space used: 8997115569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)