BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB11RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1546 1483 0.0
>3x_Contig1546
Length = 12922
Score = 1483 bits (748), Expect = 0.0
Identities = 852/876 (97%), Gaps = 8/876 (0%)
Strand = Plus / Minus
Query: 46 aaactgatatatggtgactgggaagaatcattgaaaaagactttagtcaagaacttggga 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4757 aaactgatatatggtgactgggaagaatcattgaaaaagactttagtcaagaacttggga 4698
Query: 106 aaaacacccgattgcatatttgcttcacctccgtggggtggtgttgactatttgagacag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4697 aaaacacccgattgcatatttgcttcacctccgtggggtggtgttgactatttgagacag 4638
Query: 166 gacacttatgacctcgaagaacatttacagccgtcgccattatcaaagatacttagcgtt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4637 gacacttatgacctcgaagaacatttacagccgtcgccattatcaaagatacttagcgtt 4578
Query: 226 ttcttctctgtatgtcagaatgtagttttgtttctaccgagaaactcagatcttgatcag 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4577 ttcttctctgtatgtcagaatgtagttttgtttctaccgagaaactcagatcttgatcag 4518
Query: 286 ttgtcctcaattactcatgacttattaggccctgatgaaaaatgtaaagttgtttatgtt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4517 ttgtcctcaattactcatgacttattaggccctgatgaaaaatgtaaagttgtttatgtt 4458
Query: 346 aaggataacggttacatgaaaggaatacttgcattttgggggagaccattctatgatttt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4457 aaggataacggttacatgaaaggaatacttgcattttgggggagaccattctatgatttt 4398
Query: 406 tctgagtactatccaacagaaatagaggaagaggaatcgcatgaattaaataataaaaga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4397 tctgagtactatccaacagaaatagaggaagaggaatcgcatgaattaaataataaaaga 4338
Query: 466 tcatcgaaagatcttgaaattaaaatggaggattttgtattgaaacatttgtatttcaca 525
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4337 tcatcgaaagatcttgaaattaaaatggagga-tttgtattgaaacatttgtatttcaca 4279
Query: 526 cttgtgtttcacacttgagtgcttaatggactttttgtagattgaaatattagtatactg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4278 cttgtgtttcacacttgagtgcttaatggactttttgtagattgaaatattagtatactg 4219
Query: 586 atcacctcaagtattattatagaaattattatacatataaaatggaaaccaaaagt-atg 644
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct: 4218 atcacctcaagtattattatagaaattataatacatataaaatggaaa-caaaagtaatg 4160
Query: 645 gaaaatggcttccttttcgcatgagcccaaaaatagtagtaaaatgcgagaagcgagaaa 704
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4159 gaaaatggcttcctttccgcaggagcccaaaaatagtagtaaaatgcgagaagcgagaaa 4100
Query: 705 tataggtcgtcataaaacactcatttaaatgattctttactttggtcatacaagcaaat- 763
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 4099 tataggtcgtcataaaacactcattaaaatgattctttactttgttcatacaagcaaata 4040
Query: 764 accaccaaaaatgcaaggaacttcaga-ttggatggaatatccacctttgaaataaatac 822
|||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||||
Sbjct: 4039 accaccaaaaatgcaaggaactcaagagttggatgggatatccacctttgaaatagatac 3980
Query: 823 c-tactatcagcaacgtgtttaagctttgattgaagggacccggctgcatgcttgttc-a 880
| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct: 3979 cttactatcagcaacgtgtctaagctttgatagaagggacccgtctgcatgcttgttcaa 3920
Query: 881 tttatcggctttcaaggatttg-tgattaaagaaac 915
| ||||| ||||||| |||||| ||||||| |||||
Sbjct: 3919 tatatcgtctttcaaagatttgttgattaaggaaac 3884
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7737
Number of Sequences: 1807
Number of extensions: 7737
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)