BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB12FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1790 1578 0.0
>3x_Contig1790
Length = 27369
Score = 1578 bits (796), Expect = 0.0
Identities = 840/853 (98%), Gaps = 2/853 (0%)
Strand = Plus / Plus
Query: 88 ccctgagttttcgagcagtttatcgtcatgtttaaacgtctcatcctatgaagagcttgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19926 ccctgagttttcgagcagtttatcgtcatgtttaaacgtctcatcctatgaagagcttgt 19985
Query: 148 caagaaaggtcttgctcaacattctcttttactctggattgtcaaagctcacaatgctaa 207
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 19986 caagaaaggtcttgctcaacatgcacttttactctggattgtcaaagctcacaatgctaa 20045
Query: 208 gttttataaaattccccactcgccttcattcgttagcgatacctttaatgatgtcgagcg 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20046 gttttataaaagtccccactcgccttcattcgttagcgatacctttaatgatgtcgagcg 20105
Query: 268 caatatcacgatcgaaaaggacgatgtcttagaatacatgcaattttaccaagcgttttt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20106 caatatcacgatcgaaaaggacgatgtcttagaatacatgcaattttaccaagcgttttt 20165
Query: 328 ccctaatctctcacagatgtttcctaaagtgtacagtgtaggaagttggtccataaagga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20166 ccctaatctctcacagatgtttcctaaagtgtacagtgtaggaagttggtccataaagga 20225
Query: 388 cttcattatcgctggtgtggtgatggaccgtattgtatggttgagaatggcaagcaatga 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20226 cttcattatcgctggtgtggtgatggaccgtattgtatggttgagaatggcaagcaatga 20285
Query: 448 atatttcctattcgaaaagcaaacatttgatttcaaaagatcctattcctaacagcagta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20286 atatttcctattcgaaaagcaaacatttgatttcaaaagatcctattcctaacagcagta 20345
Query: 508 agagtggcgtagtaccaatccaatacgctgaggcttttatgtcagtagcctggataccta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20346 agagtggcgtagtaccaatccaatacgctgaggcttttatgtcagtagcctggataccta 20405
Query: 568 taccactgactaactaatgctcatcttcacttgatatatcgncgaattcatttcattcag 627
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 20406 taccactgactaactaatgctcatcttcacttgatatatcgtcgaattcatttcattcag 20465
Query: 628 ttacttggattagncaagtgctgtcaagggccctttaatttactactggttcatttttca 687
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20466 ttacttggattagtcaagtgctgtcaagggccctttaatttactactggttcatttttca 20525
Query: 688 gaaagtccatccctcaattttgtccttctcacaacttcattgttcttcgtggtccgttta 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20526 gaaagtccatccctcaattttgtccttctcacaacttcattgttcttcgtggtccgttta 20585
Query: 748 taagcattgcatctttgaattctgcttaataagagattttg-ttggattcttttattaaa 806
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 20586 taagcattgcatctttgaattctgcttaataagagattttgtttggattcttttattaag 20645
Query: 807 gcgcgaaaaactttccactagttagagaacaaccataanactattacgaatatcaacatg 866
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 20646 gcgcgaaaaactttccactagttagagaacaaccataaaactataacgaatatcaacatg 20705
Query: 867 aggtttatagaaagaaaagtggaatttcaattttaatataaaatattagat-actatact 925
||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 20706 aggttaatagaaagaaaagtggtatttcaattttaatataaaatattagataactatact 20765
Query: 926 atcttattaatag 938
||| |||||||||
Sbjct: 20766 atcatattaatag 20778
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6246
Number of Sequences: 1807
Number of extensions: 6246
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)