BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZB12RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig421 1285 0.0
>3x_Contig421
Length = 2105
Score = 1285 bits (648), Expect = 0.0
Identities = 717/736 (97%), Gaps = 3/736 (0%)
Strand = Plus / Plus
Query: 49 tgcctaccatccagcctattgctaagagagaagggtttgccactgtgcctgatgt-acat 107
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1367 tgcctaccatccagcctactgctaagagagaagggtttgccactgtgcctgatgtcacat 1426
Query: 108 ggtccagtgtcggtgctttagataaaattcgtattgaattgaacatggctatcgtacaat 167
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1427 ggtccagtgtcggtgctttagataaaattcgtattgaattgaacatggctatcgtacaac 1486
Query: 168 tcttcaaaagaccagagctttacgagaaagttggtattagagcgctagcctc-gctcttt 226
||||||||||||||||||||||||||||||||||||| |||| ||| | |||||
Sbjct: 1487 cgatcaaaagaccagagctttacgagaaagttggtattagtgcgccagcaggtgttcttt 1546
Query: 227 tatggggaccttcaggttgtggtaagactcttttagctaaagctgttgctaatgaatcca 286
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1547 tatggggacctccaggttgtggtaagactcttttagctaaagctgttgctaatgaatcca 1606
Query: 287 gagcaaactttatctccatcaagggtcctgaactattaaacaaatacgttggtgaatcag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1607 gagcaaactttatctccatcaagggtcctgaactattaaacaaatacgttggtgaatcag 1666
Query: 347 agagggcaataagacaagtattcaacagagcacgtgcatccgtaccatgtataatattct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 agagggcaataagacaagtattcaacagagcacgtgcatccgtaccatgtataatattct 1726
Query: 407 tcgatgaattagatgctctcgttccaagaagagatgcgtctttgtcggagtcatcttctc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1727 tcgatgaattagatgctctcgttccaagaagagatgcgtctttgtcggagtcatcttctc 1786
Query: 467 gtgttgttaataccttactaacagaattggatggtttaaacgataggagaggaatattcg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1787 gtgttgttaataccttactaacagaattggatggtttaaacgataggagaggaatattcg 1846
Query: 527 ttgtaggcgcgacgaatagaccagatatgatagacccagcgatgctaagaccagggagac 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1847 ttgtaggcgcgacgaatagaccagatatgatagacccagcgatgctaagaccagggagac 1906
Query: 587 tcgataaaacccttttcatagaattaccaaatttcgaagaaaaggtcgatattatgagaa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1907 tcgataaaacccttttcatagaattaccaaatttcgaagaaaaggtcgatattatgagaa 1966
Query: 647 ctttgattagatcaaacggaactccaattgcagacgacgtagatataaacaggatttgta 706
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1967 ctttgattagatcaaacggaactccaattgcagacgacgtagatataaacaggattgtta 2026
Query: 707 atgatgaacgttgcaagaacttttcgggtgcagatttcgccgcactggtccgag-attat 765
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct: 2027 atgatgaacgttgcaagaacttttcgggtgcagatatcgccgcactggtccgagaatcat 2086
Query: 766 ccgtcctggctctcaa 781
||||||||||||||||
Sbjct: 2087 ccgtcctggctctcaa 2102
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7061
Number of Sequences: 1807
Number of extensions: 7061
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)