BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZC01RM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1774                                                        1189   0.0  

>3x_Contig1774 
          Length = 27771

 Score = 1189 bits (600), Expect = 0.0
 Identities = 689/716 (96%), Gaps = 2/716 (0%)
 Strand = Plus / Minus

                                                                        
Query: 49   gggtcaaatctctgctggtatcgttgctctggttttggttgctgcttacaagggtgattt 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 gggtcaaatctctgctggtatcgttgctctggttttggttgctgcttacaagggtgattt 1293

                                                                        
Query: 109  ggaagatgctaccactggtaactgtggtccagcttgtcaaaaggcatgtgatcaaatgtg 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 ggaagatgctaccactggtaactgtggtccagcttgtcaaaaggcatgtgatcaaatgtg 1233

                                                                        
Query: 169  gagaatcttgatcggtttgggttgtttaccaggttgtattgctctatacttcatattgac 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1232 gagaatcttgatcggtttgggttgtttaccaggttgtattgctctatacttcagattgac 1173

                                                                        
Query: 229  tatcccagaatccccacgttataccttggatgtcgacatggacttcaacaagggtgctgc 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 tatcccagaatccccacgttataccttggatgtcgacatggacttcaacaagggtgctgc 1113

                                                                        
Query: 289  tgatgctgctaagtttacttctggtgaacacggtaacgctgaacaagaagaaattgccaa 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 tgatgctgctaagtttacttctggtgaacacggtaacgctgaacaagaagaaattgccaa 1053

                                                                        
Query: 349  attggaaaaggctccaactgccgttgaaactatggaaatcaagccaccagctgcctcctt 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 attggaaaaggctccaactgccgttgaaactatggaaatcaagccaccagctgcctcctt 993

                                                                        
Query: 409  caaggatttcaccagacatttcaaccaatggaagcacatgaagattttgatcggtaccgc 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  caaggatttcaccagacatttcaaccaatggaagcacatgaagattttgatcggtaccgc 933

                                                                        
Query: 469  tggttcatggttcttgttggatgttgccttctacagtgtttctttgaactccgctgttat 528
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 932  tggttcatggttcttgttggatgttgccttctacggtgtttctttgaactccgctgttat 873

                                                                        
Query: 529  tttgcaaactattggctacgctagttcttcctacgtttacagaaagttgtacaactctgc 588
            ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 872  tttgcaaactattggctacgctagttcttctaacgtttacagaaagttgtacaactctgc 813

                                                                        
Query: 589  cgttggtaacttgattttaatttgtgccggttctttgccaggttacctggtctctgtcgc 648
            ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 812  cgttggtaacttgattttaatttgtgccggttctttgccaggttactgggtctctgtcgc 753

                                                                        
Query: 649  ttacattgatgtccttgggtgaaaaacaatccattggat-ggttttgtcatcttgaccat 707
            |  |||||||||| ||||  ||||| ||||||| | ||| ||||| ||||||||||||||
Sbjct: 752  taccattgatgtcattggtagaaaaccaatccaattgatgggtttcgtcatcttgaccat 693

                                                                    
Query: 708  ttggttccggattaatgggtttgccttaccacaagaatggggaccatggtctatta 763
            || |||| | | | || |||||  ||||| |||||| ||| |||||||||||||||
Sbjct: 692  tttgttctgta-tcattggtttcgcttacgacaagattggtgaccatggtctatta 638


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7344
Number of Sequences: 1807
Number of extensions: 7344
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)