BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC02FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1748 1598 0.0
>3x_Contig1748
Length = 22566
Score = 1598 bits (806), Expect = 0.0
Identities = 840/850 (98%), Gaps = 1/850 (0%)
Strand = Plus / Plus
Query: 88 tgcagtgatttctgcaattctgaacatcacctggtatgctgtctcatgttccggcgcgag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7287 tgcagtgatttctgcaattctgaacatcacctggtatgctgtctcatgttccggcgcgag 7346
Query: 148 aaagccattaattactgcaggtaatcctatttgttcaaagacggcattttcacgcgcttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7347 aaagccattaattactgcaggtaatcctatttgttcaaagacggcattttcacgcgcttt 7406
Query: 208 tgctccccattatgtatcatattgattatcagtacgacctctttccattattatgatact 267
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7407 tgctccccataatgcatcatattgattatcagtacgacctctttccattattatgatact 7466
Query: 268 tagatgttactgctagcttaaaggcctccttattatgttattttccgtgcggtgagttaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7467 tagatgttactgctagcttaaaggcctccttattatgttattttccgtgcggtgagttaa 7526
Query: 328 tgttttagttattcaaattattgtgtttgtaaatgtccaaatataagttactttgcttca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7527 tgttttagttattcaaattattgtgtttgtaaatgtccaaatataagttactttgcttca 7586
Query: 388 atggaaatgatgaaattgtagagttgagaaccaaaaatcaaaaaacaccgtagacaggtc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7587 atggaaatgatgaaattgtagagttgagaaccaaaaatcaaaaaacaccgtagacaggtc 7646
Query: 448 tacttagaggaggagtttctctgtaagttcaagtagactaaacgccatccactctagaag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7647 tacttagaggaggagtttctctgtaagttcaagtagactaaacgccatccactctagaag 7706
Query: 508 aattagaagcgcaataacggtaaaaaaagaggttatagttttatgcttacaagtaaccga 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7707 aattagaagcgcaataacggtaaaaaaagaggttatagttttatgcttacaagtaaccga 7766
Query: 568 atataaaaaaattgtaaaacctatatatgcaaaatcaaataacctagttaaccaaagcag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7767 atataaaaaaattgtaaaacctatatatgcaaaatcaaataacctagttaaccaaagcag 7826
Query: 628 aagcagtggcggattcgtacttccagtttggtggcaagacagaaacagttctgtagtatc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7827 aagcagtggcggattcgtacttccagtttggtggcaagacagaaacagttctgtagtatc 7886
Query: 688 tagccaatctgtgaattctggattcgatcaaaatcaatctgaatttagcatccttatctt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7887 tagccaatctgtgaattctggattcgatcaaaatcaatctgaatttagcatccttatctt 7946
Query: 748 ttctgtttctttccaaatgctttctgacagagacagccttcttgatcaagaagtacaaat 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7947 ttctgtttctttccaaatgctttctgacagagacagccttcttgatcaagaagtacaaat 8006
Query: 808 cttctgggatttctggagccaaaccgttagacttcaagattctaagaatcttgttaccag 867
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 8007 cttctgggatttctggagccaaaccgttagacttcaagattctcaagatcttgttaccag 8066
Query: 868 taatgaccttagcttggataacaccgtgagcatctctcaacaagacaccga-ttgagatg 926
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8067 taatgaccttagcttgagtaacaccgtgagcatctctcaacaagacaccgatttgagatg 8126
Query: 927 tagtccaacc 936
|||| ||||
Sbjct: 8127 gagtcaaacc 8136
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7084
Number of Sequences: 1807
Number of extensions: 7084
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)