BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC02RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1618 0.0
>3x_Contig1590
Length = 13653
Score = 1618 bits (816), Expect = 0.0
Identities = 852/860 (99%), Gaps = 3/860 (0%)
Strand = Plus / Plus
Query: 47 cgaaaactgaaatc-agttacagcttttatgatagaagcggtaaatgaagataaactgtc 105
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 cgaaaactgaaatccagttacagcttttatgatagaagcggtaaatgaagataaactgtc 3953
Query: 106 gcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagtaaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 gcgagtagttaagtattcagtggaaggcgacccaaggcgattttcgatttaggaagtaaa 4013
Query: 166 ccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaatggg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 ccgatatacttacggaaaattaagtaaggcttatcaagacatcaaaaggaaaacaatggg 4073
Query: 226 gaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggataccg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 gaagagtagtaaagataaacgtgatctgtactacagaaaggctaaggaacaaggataccg 4133
Query: 286 tgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagcaggc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 tgcgagatccgctttcaagttattacagttagacgacgactttcattttttgcagcaggc 4193
Query: 346 tgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtctagaag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tgtacgagtggtggacctttgcgctgctccgggatcttggtctcaggtcttgtctagaag 4253
Query: 406 actatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgcagcc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 actatttcctcagagttcagataattcagatagaaagattgttgcagttgatttgcagcc 4313
Query: 466 catgtcaccgatcgataatgtaatcacattacaggcggatattacacatcctaaaactct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 catgtcaccgatcgataatgtaatcacattacaggcggatattacacatcctaaaactct 4373
Query: 526 acaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatggtgc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 acaaaccataaccgagctttttgagggtaagaaagctgattttatttgtagcgatggtgc 4433
Query: 586 gccagatgtcaccggtttacacgatttagacgagtatgttcaacagcagttaattttaag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 gccagatgtcaccggtttacacgatttagacgagtatgttcaacagcagttaattttaag 4493
Query: 646 cgcattacagctatctacctgtttgttaagataaggtggaaattttgttgccaaaatatt 705
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4494 cgcattacagctatctacctgtttgttaagaaaaggtggaaattttgttgccaaaatatt 4553
Query: 706 tagaggaagagatatagacatgttgtattctcagcttggatatctttttggagaaagtta 765
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4554 tagaggaagagatatagacatgttgtattctcagcttggatatcttttt-gagaaagtta 4612
Query: 766 tttgcgctaaaccaagatcttcaagagg-acatcattagaatcatttatcgtctgccttg 824
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4613 tttgcgctaaaccaagatcttcaagaggaacatcattagaatcatttatcgtctgccttg 4672
Query: 825 gttacaatccaccaccaaactgggaaccaaatttagatgttaattcttcaatagaagact 884
|||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct: 4673 gttacaatccaccagcaaactgggaaccaaaattagatgtaaattcttcagtagaagact 4732
Query: 885 tcttccagggatgcgatatc 904
||||||||||||||||||||
Sbjct: 4733 tcttccagggatgcgatatc 4752
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6163
Number of Sequences: 1807
Number of extensions: 6163
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)