BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC03FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1522 1461 0.0
>3x_Contig1522
Length = 7810
Score = 1461 bits (737), Expect = 0.0
Identities = 856/881 (97%), Gaps = 11/881 (1%)
Strand = Plus / Minus
Query: 88 ttaaggtttgagccgatctttacttggaatgcgaaactgcccggtgcagaaacagaaacg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4471 ttaaggtttgagccgatctttacttggaatgcgaaactgcccggtgcagaaacagaaacg 4412
Query: 148 gaaacaaagcaatagcatgaagtcgagcattttgaagggtttgcattgatcgtatatttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4411 gaaacaaagcaatagcatgaagtcgagcattttgaagggtttgcattgatcgtatatttt 4352
Query: 208 cccaagcgcatctttgttaagagagagggttttatttattttgagaataatgttttcagt 267
|||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4351 cccaagcgcagcttggg-aagagagagggttttatttattttgagaataatgttttcagt 4293
Query: 268 acatagtgatgattcatgtatcaatgaggctttcttaagttatgcaagctgtgtgtagag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4292 acatagtgatgattcatgtatcaatgaggctttcttaagttatgcaagctgtgtgtagag 4233
Query: 328 tcgtcatcccttcatttcaatttggacaagtcgtatggagtagagtttacagtgatgatc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4232 tcgtcatcccttcatttcaatttggacaagtcgtatggagtagagtttacagtgatgatc 4173
Query: 388 tcttcgtacaatagtgtagttaaaaattcgctgaatttttcaccggtgatttcaggttcg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4172 tcttcgtacaatagtgtagttaaaaattcgctgaatttttcaccggtgatttcaggttcg 4113
Query: 448 aagtatgtagcagctagctcgaacttgttagcatcaccaacaggagacttggcagctagt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4112 aagtatgtagcagctagctcgaacttgttagcatcaccaacaggagacttggcagctagt 4053
Query: 508 tctttagcttgttggtaaagaatttccttagcaagtgcaggagtgacttgtttaccagta 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4052 tctttagcttgttggtaaagaatttccttagcaagtgcaggagtgacttgtttaccagta 3993
Query: 568 tcctttaacacaatcttatgcttgacccattggtgtagctgacaacgggacacttcagcg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3992 tcctttaacacaatcttatgcttgacccattggtgtagctgacaacgggacacttcagcg 3933
Query: 628 gtggcagcgtcttccatcaagttattgattggaacacaaccacttcctctcaaccaagcc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3932 gtggcagcgtcttccatcaagttattgattggaacacaaccacttcctctcaaccaagcc 3873
Query: 688 tccatatattgcaaaccaatgtctaagttttgcttgataccggcagtagtaatttcacca 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3872 tccatatattgcaaaccaatgtctaagttttgcttgataccggcagtagtaatttcacca 3813
Query: 748 ccttcgatgttagtgtttaacaagttctga-gcagcgacagaaaagttctggcacaaaat 806
|||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||||
Sbjct: 3812 ccttcgatgttagtgtttaacaag-tctgaggcagcgacag-aagtttctggcacaaaat 3755
Query: 807 agattttggtttggagtacccattttcgcgaaaacttcgttacaaatggcagcaagaact 866
||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||
Sbjct: 3754 aga-tttggtttggagtacccatttcggcgaaaacttcgttacagatggcagcaagagct 3696
Query: 867 gggtgagcaaaccaagaa-catcgtgaccg-tagtacattctct-atcttatcgttacgg 923
|||||||||| ||| ||| ||||||||||| |||| ||||||| |||||||||||||||
Sbjct: 3695 gggtgagcaacccaggaaccatcgtgaccgttagtcaattctctaatcttatcgttacgg 3636
Query: 924 acc-tggtcattagcagcgttgttggc-tcctcgttatcct 962
||| |||||| ||||||||||||| || |||||||||||||
Sbjct: 3635 accttggtca-tagcagcgttgtttgcttcctcgttatcct 3596
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6182
Number of Sequences: 1807
Number of extensions: 6182
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)