BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC03RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig565 769 0.0
>3x_Contig565
Length = 3548
Score = 769 bits (388), Expect = 0.0
Identities = 454/471 (96%), Gaps = 4/471 (0%)
Strand = Plus / Plus
Query: 261 aattgattcaacagctaagaactcaatccaacggtactggccgtgaagattccgaaacag 320
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7 aattgatt-aacagctaagaactcaatcca-cggtactggccgtgaagattccgaaacag 64
Query: 321 cacttgtttccagagattcaaagaaacaagaagttcaaacaagtggccgttctttgagag 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cacttgtttccagagattcaaagaaacaagaagttcaaacaagtggccgttctttgagag 124
Query: 381 aagttgtcttagatgaacctatcagatacgctcctggtgacccagttgaaaaatggttga 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aagttgtcttagatgaacctatcagatacgctcctggtgacccagttgaaaaatggttga 184
Query: 441 ataaattactttgtttggacgttcaactaatcaaaaatccaagatttgctgctagaggca 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ataaattactttgtttggacgttcaactaatcaaaaatccaagatttgctgctagaggca 244
Query: 501 cacctcatccatctcaatgtaatttattcatcgtcaatagagatactctattttcttatc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cacctcatccatctcaatgtaatttattcatcgtcaatagagatactctattttcttatc 304
Query: 561 atcctgtttctgaaaattttctggagaagatgatggctctttttgtcgcatcgcattaca 620
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 305 atcctgtttctgaaaattttctggagaagatgatggctctttatgtcgcatcgcattaca 364
Query: 621 agatttttccttacgacttgcaattaatgaatgatgcacccgctcatcaactatttcgtt 680
||| || |||| |||||||||||||||||| ||||||||| |||||||||||| ||||||
Sbjct: 365 agaattctcctaacgacttgcaattaatgagtgatgcacctgctcatcaacta-ttcgtt 423
Query: 681 ttattgcctnccattgattccaaagaatgcggcagaattacccgatccctt 731
||||||||| |||| ||| | ||||| ||||||||| |||| ||||||||
Sbjct: 424 ttattgcctcccatcgatccaaaagatggcggcagaa-tacctgatccctt 473
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7982
Number of Sequences: 1807
Number of extensions: 7982
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)