BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC04FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig931 1092 0.0
>3x_Contig931
Length = 3901
Score = 1092 bits (551), Expect = 0.0
Identities = 612/627 (97%), Gaps = 4/627 (0%)
Strand = Plus / Plus
Query: 197 gcatccgaagtacattttttttaacctacctctgcaaccgaagggcgctcgccaacaggt 256
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcatccgaagtacataagttataacctacctctgcaaccgaagggcgctcgccaacaggt 60
Query: 257 gacgaacttctgcagtcctctctcaatggtttcaaggcccacggccacgcgatattctac 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacgaacttctgcagtcctctctcaatggtttcaaggcccacggccacgcgatattctac 120
Query: 317 cagcttcacgagatccgggtaatgtcctgattttttttccttctttttcctccagctttg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagcttcacgagatccgggtaatgtcctgattttttttccttctttttcctccagctttg 180
Query: 377 ataaggaaaagaaatgtcgggtattattaaccataagattctcaatcaagcaaggctcat 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataaggaaaagaaatgtcgggtattattaaccataagattctcaatcaagcaaggctcat 240
Query: 437 cacacggagtctgaaagcgaaaacgtcaacgaagatgggttggttctgggctgacaagct 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cacacggagtctgaaagcgaaaacgtcaacgaagatgggttggttctgggctgacaagct 300
Query: 497 aagcacagcgtcaactaatgctactccaatttctggagatatttctgcgtgccctgtgat 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagcacagcgtcaactaatgctactccaatttctggagatatttctgcgtgccctgtgat 360
Query: 557 gcacgataaacctaagggaagcgatgtttccgcatgccctgttctttatgataagaagac 616
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 361 gcacgataaacctaagggaagcgatgtttccgcatgccctgttcttcatgataagaagac 420
Query: 617 cacagataaacccaccggtacggaaggtggttgtccagtcttgtctgatcaaggtaatca 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cacagataaacccaccggtacggaaggtggttgtccagtcttgtctgatcaaggtaatca 480
Query: 677 tggcttaaatcctttgaacaacattcctatcgccttgactgatgtcaaacagtcttggtt 736
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 481 tggcttaaatcctttgaacaacattcctatcgccttgactgatgtcaaacagtc-tggtc 539
Query: 737 ataaactcgatctaccaacggagcgtaccgttagtttccataccaaagggtaataatgcc 796
| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct: 540 aaaaactcgatctaccaacggagcgtaccgttag-ttccataccaaagggtaagactgcc 598
Query: 797 gaatgataaaatttggggaatatcctt 823
| ||||| ||||| ||||||||||||
Sbjct: 599 g-atgat-gaattttgggaatatcctt 623
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6528
Number of Sequences: 1807
Number of extensions: 6528
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)