BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC7ZC04RM1.SCF screened BAC_end (972 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1575 959 0.0 >3x_Contig1575 Length = 11952 Score = 959 bits (484), Expect = 0.0 Identities = 611/635 (96%), Gaps = 14/635 (2%) Strand = Plus / Minus Query: 47 ttctgcttttcgtctttattgttgggtagcaccccggttcatcttatgtgcattttatca 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4965 ttctgcttttcgtctttattgttgggtagcaccccggttcatcttatgtgcattttatca 4906 Query: 107 tgtggtgtgtgggtgtgaacattttccttgattttttctaatgctgcgtctatgaaatgc 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4905 tgtggtgtgtgggtgtgaacattttccttgattttttctaatgctgcgtctatgaaatgc 4846 Query: 167 cgatctgccgcaagatgttctttatgaggtttattgactcgtatatagtgattgtaccta 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4845 cgatctgccgcaagatgttctttatgaggtttattgactcgtatatagtgattgtaccta 4786 Query: 227 ttaccgggtaatgaaatatcgtaacggtcatttaacaaatgctaggtggattttggttaa 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4785 ttaccgggtaatgaaatatcgtaacggtcatttaacaaatgctaggtggattttggttaa 4726 Query: 287 atactgttgataaagatcacactctatgcttttggccagctagcggttggtctgcgtaga 346 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4725 atactgttga-aaagatcacactctatgcttttggccagctagcggttggtctgcgtaga 4667 Query: 347 attgcagagccatactggcgtcgaatccgtcttgtgcatatatatccatagtagagtcac 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4666 attgcagagccatactggcgtcgaatccgtcttgtgcatatatatccatagtagagtcac 4607 Query: 407 cgtccagatcgtcagctgtgcctgaattcacgtatacgttctgcaaatgaccgatatctg 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4606 cgtccagatcgtcagctgtgcctgaattcacgtatacgttctgcaaatgaccgatatctg 4547 Query: 467 gcatggctgaaatctncgttgtagttgaatgaggctgtgtacactgttgggtttgtccgt 526 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || Sbjct: 4546 gcatggctgaaatctccgttgtagttgaatgaggctgtgtacactgtt-ggtttgt-cgg 4489 Query: 527 ttcttcttcccgaatag-agtccatacatgtcaaaaatggctttgggacagttttttcac 585 |||||||| ||| |||| |||||||||||||| |||||||| ||| ||||| |||||||| Sbjct: 4488 ttcttctt-ccggatagaagtccatacatgtc-aaaatggcattgtgacag-tttttcac 4432 Query: 586 catagtggtcccacaggtttaattcaaatttcttggaaagtgaaccaaatctttctacct 645 ||||||| ||||| |||||||| |||| ||||| ||||||||| |||||| |||||||| Sbjct: 4431 catagtgtccccac-ggtttaatccaaa-ttctttgaaagtgaa-caaatc-ttctacct 4376 Query: 646 cccacgttataattgtctattcaaaatgggcatac 680 ||||||||||| |||||| ||||||| ||||||| Sbjct: 4375 -ccacgttataa-tgtcta-tcaaaattggcatac 4344 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6660 Number of Sequences: 1807 Number of extensions: 6660 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 972 length of database: 10,358,551 effective HSP length: 16 effective length of query: 956 effective length of database: 10,329,639 effective search space: 9875134884 effective search space used: 9875134884 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)