BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZC04RM1.SCF screened BAC_end
         (972 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1575                                                         959   0.0  

>3x_Contig1575 
          Length = 11952

 Score =  959 bits (484), Expect = 0.0
 Identities = 611/635 (96%), Gaps = 14/635 (2%)
 Strand = Plus / Minus

                                                                        
Query: 47   ttctgcttttcgtctttattgttgggtagcaccccggttcatcttatgtgcattttatca 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4965 ttctgcttttcgtctttattgttgggtagcaccccggttcatcttatgtgcattttatca 4906

                                                                        
Query: 107  tgtggtgtgtgggtgtgaacattttccttgattttttctaatgctgcgtctatgaaatgc 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4905 tgtggtgtgtgggtgtgaacattttccttgattttttctaatgctgcgtctatgaaatgc 4846

                                                                        
Query: 167  cgatctgccgcaagatgttctttatgaggtttattgactcgtatatagtgattgtaccta 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4845 cgatctgccgcaagatgttctttatgaggtttattgactcgtatatagtgattgtaccta 4786

                                                                        
Query: 227  ttaccgggtaatgaaatatcgtaacggtcatttaacaaatgctaggtggattttggttaa 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4785 ttaccgggtaatgaaatatcgtaacggtcatttaacaaatgctaggtggattttggttaa 4726

                                                                        
Query: 287  atactgttgataaagatcacactctatgcttttggccagctagcggttggtctgcgtaga 346
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4725 atactgttga-aaagatcacactctatgcttttggccagctagcggttggtctgcgtaga 4667

                                                                        
Query: 347  attgcagagccatactggcgtcgaatccgtcttgtgcatatatatccatagtagagtcac 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4666 attgcagagccatactggcgtcgaatccgtcttgtgcatatatatccatagtagagtcac 4607

                                                                        
Query: 407  cgtccagatcgtcagctgtgcctgaattcacgtatacgttctgcaaatgaccgatatctg 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4606 cgtccagatcgtcagctgtgcctgaattcacgtatacgttctgcaaatgaccgatatctg 4547

                                                                        
Query: 467  gcatggctgaaatctncgttgtagttgaatgaggctgtgtacactgttgggtttgtccgt 526
            ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || 
Sbjct: 4546 gcatggctgaaatctccgttgtagttgaatgaggctgtgtacactgtt-ggtttgt-cgg 4489

                                                                        
Query: 527  ttcttcttcccgaatag-agtccatacatgtcaaaaatggctttgggacagttttttcac 585
            |||||||| ||| |||| |||||||||||||| |||||||| ||| ||||| ||||||||
Sbjct: 4488 ttcttctt-ccggatagaagtccatacatgtc-aaaatggcattgtgacag-tttttcac 4432

                                                                        
Query: 586  catagtggtcccacaggtttaattcaaatttcttggaaagtgaaccaaatctttctacct 645
            |||||||  ||||| |||||||| |||| ||||| ||||||||| |||||| ||||||||
Sbjct: 4431 catagtgtccccac-ggtttaatccaaa-ttctttgaaagtgaa-caaatc-ttctacct 4376

                                               
Query: 646  cccacgttataattgtctattcaaaatgggcatac 680
             ||||||||||| |||||| ||||||| |||||||
Sbjct: 4375 -ccacgttataa-tgtcta-tcaaaattggcatac 4344


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6660
Number of Sequences: 1807
Number of extensions: 6660
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)