BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC05RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1330 0.0
>3x_Contig1642
Length = 16641
Score = 1330 bits (671), Expect = 0.0
Identities = 734/751 (97%), Gaps = 3/751 (0%)
Strand = Plus / Minus
Query: 48 tgagcgaagtgattttctgtttaaagttccaacgaaatcagaggcaaccagttggttgaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12559 tgagcgaagtgattttctgtttaaagttccaacgaaatcagaggcaaccagttggttgaa 12500
Query: 108 gttaagtcccaaatcagagtgatttgcatcaaggatttgaagagctcgttttgtttctga 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12499 gttaagtcccaaatcagagtgatttgcatcaaggatttgaagagctcgttttgtttctga 12440
Query: 168 atcagatgtgtaactcgcataattgggaacattcaataagctgttaatcttcttggataa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12439 atcagatgtgtaactcgcataattgggaacattcaataagctgttaatcttcttggataa 12380
Query: 228 aagttggtttgtagttgtaggtttctcgatgttatttgatataggagctgcgacctcctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12379 aagttggtttgtagttgtaggtttctcgatgttatttgatataggagctgcgacctcctt 12320
Query: 288 cgataaagagacggacgcagggcgtatttcaccgagggaaatgctggcaaaatgtttcat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12319 cgataaagagacggacgcagggcgtatttcaccgagggaaatgctggcaaaatgtttcat 12260
Query: 348 cttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattcggtagaacgaattt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12259 cttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattcggtagaacgaattt 12200
Query: 408 ggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaagacgtgacgctggttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12199 ggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaagacgtgacgctggttg 12140
Query: 468 aggtaatgcagcagactcgtccactaccagtgccggaaaatctagaaagtccattacaga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12139 aggtaatgcagcagactcgtccactaccagtgccggaaaatctagaaagtccattacaga 12080
Query: 528 tatgagatctgctatttataattgagtgcaatgattagttagtatgtcagaatcctgatt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12079 tatgagatctgctatttataattgagtgcaatgattagttagtatgtcagaatcctgatt 12020
Query: 588 tcgcgagtagtttaatgtctctttaatacaatttgtatgactttctatttcg-aaaatga 646
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 12019 tcgcgagtagtttaatgtctctttaatacaatttgtatgactttctatttcgaaaaatga 11960
Query: 647 aagatttaagtttttcgtatttattgaatcgggttatatatggaatgtgtgtaattgaat 706
|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct: 11959 aagatttaggtttttcgtatttattgaatcggtttatatatggtatgtgtgtaattgagt 11900
Query: 707 attgtacaattcaaaacactaaccaagtgaagattattatttgtttgaatctaccccccg 766
|||||||||||||||||| ||| |||| |||||||||| ||||||||||||||| || |
Sbjct: 11899 attgtacaattcaaaacataaacaaagtaaagattatta-ttgtttgaatctaccaccag 11841
Query: 767 tgggagactccgtccctaatttaaattaggg 797
| ||||||| ||| ||||||| |||| ||||
Sbjct: 11840 t-ggagactacgtacctaattaaaataaggg 11811
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7608
Number of Sequences: 1807
Number of extensions: 7608
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)