BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC06FM1.SCF screened BAC_end
(974 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1511 0.0
>3x_Contig1216
Length = 5132
Score = 1511 bits (762), Expect = 0.0
Identities = 855/875 (97%), Gaps = 9/875 (1%)
Strand = Plus / Minus
Query: 91 ccatgactcaaaggaaaatcccaacttgaacgctacctatccacttccacacaaggatta 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 ccatgactcaaaggaaaatcccaacttgaacgctacctatccacttccacacaaggatta 4086
Query: 151 ctcttcttggaaacctaacgagaattatatgatgttacctcaagatattatagacaaagt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 ctcttcttggaaacctaacgagaattatatgatgttacctcaagatattatagacaaagt 4026
Query: 211 tcaggatattatatggaacagaaaacaaactttatttcctcccaacattaccagtaattt 270
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4025 tcaggataatatatggaacagaaaacaaactttatttcctcccaacattaccagtaattt 3966
Query: 271 atatggtaaaatcaatctcacagataacaataaatacaccaagattaagatgcctattgc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3965 atatggtaaaatcaatctcacagataacaataaatacaccaagattaagatgcctattgc 3906
Query: 331 caattttttcgatcctccagaatccttccaggacgaaaagccagcagatggtgaacatta 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3905 caattttttcgatcctccagaatccttccaggacgaaaagccagcagatggtgaacatta 3846
Query: 391 tttggcagttgatgaaaggggtgatgctggcaaccatggagaactacacaatgtttcttg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3845 tttggcagttgatgaaaggggtgatgctggcaaccatggagaactacacaatgtttcttg 3786
Query: 451 gagttatgggatagttgatgtcagtatccaacatttggattctgttgagaactcgttgag 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3785 gagttatgggatagttgatgtcagtatccaacatttggattctgttgagaactcgttgag 3726
Query: 511 tttgtcaccagcttccatttcaacgggggaatcacagcttggagaagatgacagccattg 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3725 tttgtcaccagcttccatttcaacgggggaatcacagcttggagaagatgacagccattg 3666
Query: 571 gaagattttacatttgaacgtcaacttttacaacagagaggagacagagaagcattcgtt 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3665 gaagattttacatttgaacgtcaacttttacaacagagaggagacagagaagcattcgtt 3606
Query: 631 atctactaaaggtatctatgacatatggactgngagaattttaataatgtctcaaagtgc 690
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3605 atctactaaaggtatctatgacatatggactgggagaattttaataatgtctcaaagtgc 3546
Query: 691 taagttccattctcttttcgcctt-ccccattacttggctaacactgagaaagagttcaa 749
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3545 taagttccattctcttttcgccttcccccattacttggctaacactgagaaagagttcaa 3486
Query: 750 tcaaagtaaaagattgatcgaaaagtattggaatgcaactaactatgctgaatcattaac 809
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3485 tcaagtaaaaagattgatcgaaaagtattggaatgcaactaactatgctgaatcattaac 3426
Query: 810 catggccaatctacagcatctttcagatgaagctaacacgaagtgtgaaatatttcgggg 869
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct: 3425 catggccaatctacagcatctttcagatgaggctaacacgaagtgtg-aatatttc-ggg 3368
Query: 870 tttttacaactagaaccaatgggatcaattttaccccgnacc-aatcagaatgatngaat 928
||||||||||||||||| |||||||||| |||||||| ||| |||||||||||| | ||
Sbjct: 3367 tttttacaactagaacc-atgggatcaa-tttaccccagaccaaatcagaatgatag-at 3311
Query: 929 taagaaattgaaatggccctttgggcagaccaatt 963
||| ||||||||||| || |||||||||||||||
Sbjct: 3310 gaag-aattgaaatgg-ccattgggcagaccaatt 3278
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7089
Number of Sequences: 1807
Number of extensions: 7089
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 974
length of database: 10,358,551
effective HSP length: 16
effective length of query: 958
effective length of database: 10,329,639
effective search space: 9895794162
effective search space used: 9895794162
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)