BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC06RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1643 890 0.0
>3x_Contig1643
Length = 10865
Score = 890 bits (449), Expect = 0.0
Identities = 470/475 (98%), Gaps = 2/475 (0%)
Strand = Plus / Minus
Query: 46 ctttaaactgttgatgatgtttagatttatgtcttctttcggtatataatacatagaacc 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2089 ctttaaactgttgatgatgtttagatttatgtcttctttcggtatataatacatagaacc 2030
Query: 106 agccatagcagaaaagggctttctcgtgctttagaagtttaattccggaaaatctcatct 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 agccatagcagaaaagggctttctcgtgctttagaagtttaattccggaaaatctcatct 1970
Query: 166 tttatttctctataggcatttaatagcgatgaggggagaatcaaggaagaaaaaaataaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 tttatttctctataggcatttaatagcgatgaggggagaatcaaggaagaaaaaaataaa 1910
Query: 226 aggtcaaccacatcaacacaccaacttatggagaagatcatgcgaagtgtgtcctgataa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1909 aggtcaaccacatcaacacaccaacttatggagaagatcatgcgaagtgtgtcctgataa 1850
Query: 286 gtgcttgtattggaagagtcttcgcatgcgaataaaatgatttggtatacttctatgatt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1849 gtgcttgtattggaagagtcttcgcatgcgaataaaatgatttggtatacttctatgatt 1790
Query: 346 aacaatgtacatatttccagtaaatgattggacaattgaatattattggaacagaatatc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1789 aacaatgtacatatttccagtaaatgattggacaattgaatattattggaacagaatatc 1730
Query: 406 acctcttcctgtagtcaaacgaaaagcatctgaagcttctgggttagatatgtcaaagga 465
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1729 acctcttcctgtagtcaaacgaaaagcatctgaagcttctgggttagatatgtc-aagga 1671
Query: 466 agagactctaaacattacantagagaatattatgggnattaattaatatactatt 520
||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||
Sbjct: 1670 agagactctaaacataacaatagagaatattat-ggtattaattaatatactatt 1617
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8856
Number of Sequences: 1807
Number of extensions: 8856
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)