BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC07FM1.SCF screened BAC_end
(902 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1604 1158 0.0
>3x_Contig1604
Length = 15703
Score = 1158 bits (584), Expect = 0.0
Identities = 720/748 (96%), Gaps = 13/748 (1%)
Strand = Plus / Minus
Query: 86 cttcgtcatatctaccaaactttgtagtagaatttgaagggttaagcgcaaccgctgtaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14476 cttcgtcatatctaccaaactttgtagtagaatttgaagggttaagcgcaaccgctgtaa 14417
Query: 146 ctattccttctagtcgtctttttgtttcttgtaattcttggtcctttctctttaatgaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14416 ctattccttctagtcgtctttttgtttcttgtaattcttggtcctttctctttaatgaat 14357
Query: 206 ctgatatttttataattattatttccagggatgccggtatctggatttcagaatcgaaag 265
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14356 ctgataacttacaaaatattatttccagggatgccggtatctggatttcagaatcgaaag 14297
Query: 266 taagagcctttgatttcttcattttctgctcttcttgctgcttgaaagtcaaaccctgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14296 taagagcctttgatttcttcattttctgctcttcttgctgcttgaaagtcaaaccctgat 14237
Query: 326 tgaatacctccttcaatttttttatctctatttctaacgattctatctgtgtctctttca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14236 tgaatacctccttcaatttttttatctctatttctaacgattctatctgtgtctctttca 14177
Query: 386 actgtagttcaagtttgaagttgtctgatgatggctctgtttcagagtcgaaagtggtat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14176 actgtagttcaagtttgaagttgtctgatgatggctctgtttcagagtcgaaagtggtat 14117
Query: 446 tgaatcctgagcttttagcatatgatgatctgtccattattaccgtgttatttgaagagc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14116 tgaatcctgagcttttagcatatgatgatctgtccattattaccgtgttatttgaagagc 14057
Query: 506 tttcaggatgcgtgtttgacgaaatgcctct-cgaggactctat-ctcgggcgaattatg 563
|| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 14056 ttccaggatgcgtgtttgacgaaatgcctctgcgaggactctatgctcgggcgaattatg 13997
Query: 564 ttgttctatgagcggctgttcccaata-tgatgacatgc-tgctccta-tgagtagaaga 620
||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 13996 ttgttctatgagcggctgttcccaatagtgatgacatgcgtgctcctagtgagtagaaga 13937
Query: 621 tccgctcaaatggcccctgaagtccttggttattagt-ggagcccataccatcaatgttc 679
||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 13936 tccgctcaaatgg-ccctgaagtccttggtta-tagtgggagcccataccatcaatgttc 13879
Query: 680 ccatgtaagctgaagctacctccatgt-gccatgctggagttcatgacattggcgggttg 738
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 13878 ccatgtaagctgaagctacctccatgtggccatgctggagttcatgacattggc-ggttg 13820
Query: 739 ggccatacaattgggacttcgtcatacctcccaaaatttagattggcgaaagagttattc 798
||||||||||| |||| |||||| | || |||||||| |||||||||||||||||| ||
Sbjct: 13819 tgccatacaatttggac-tcgtcagaactaccaaaattcagattggcgaaagagtta-tc 13762
Query: 799 cacactcggttggttaatattcaggttg 826
|| |||| ||||||| ||||||||||||
Sbjct: 13761 caaactctgttggtt-atattcaggttg 13735
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6563
Number of Sequences: 1807
Number of extensions: 6563
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 902
length of database: 10,358,551
effective HSP length: 16
effective length of query: 886
effective length of database: 10,329,639
effective search space: 9152060154
effective search space used: 9152060154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)