BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC07RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig511 615 e-176
3x_Contig1600 329 6e-90
>3x_Contig511
Length = 2409
Score = 615 bits (310), Expect = e-176
Identities = 317/318 (99%), Gaps = 1/318 (0%)
Strand = Plus / Minus
Query: 53 actttcgt-cttaaatctggaaatgaagcctcgcttggagattgggaggttgaaaaaata 111
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actttcgtacttaaatctggaaatgaagcctcgcttggagattgggaggttgaaaaaata 270
Query: 112 atctccacactcattgcgaaaagaattaaacaacttgaaaatctaccctctaatttggga 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atctccacactcattgcgaaaagaattaaacaacttgaaaatctaccctctaatttggga 210
Query: 172 acatattctttaaatgatgcgcttgattttgtaactaaagatgatattcctaccggcgca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 acatattctttaaatgatgcgcttgattttgtaactaaagatgatattcctaccggcgca 150
Query: 232 gacgacttcaagttaagagctttggtggagctcaagtccttgaaaatgctaacgaaacag 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gacgacttcaagttaagagctttggtggagctcaagtccttgaaaatgctaacgaaacag 90
Query: 292 aaatctttgagaaagaggctgattgaaagtgttgcagctaaatcgcataatatcattcca 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 aaatctttgagaaagaggctgattgaaagtgttgcagctaaatcgcataatatcattcca 30
Query: 352 tctctccgtgactctcct 369
||||||||||||||||||
Sbjct: 29 tctctccgtgactctcct 12
>3x_Contig1600
Length = 9359
Score = 329 bits (166), Expect = 6e-90
Identities = 232/250 (92%), Gaps = 3/250 (1%)
Strand = Plus / Plus
Query: 653 agcaacgtttagcagcctttgagtccaatgatgaagaagcatatttgaaattgttagacc 712
||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||
Sbjct: 1 agcaacgtttagcagccttgaagtccaatgatgaagaagcatattggaa-ttgttagacc 59
Query: 713 aaaccaaagatacaagaattacacatctattgaaacaaactaattctttcttggattctc 772
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 aacccaaagatacaagaattacacatctattgaaacaaactaattctttcttggattctc 119
Query: 773 ttgctcaaggcgttagagtgcagcataatgaggtacgcatcaaaaggggtgaa-aaattc 831
||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 120 ttgctcaagcggttagagtgcagcaaaatgaggtacgcatcaaaaggggtgaagaaattc 179
Query: 832 cttccatcacggatgaagaaagaga-aaaattgatttttaccagggtttccccaggatta 890
|| | |||||||||||||||||||| |||||||||| |||| ||| || || ||| ||||
Sbjct: 180 ctccaatcacggatgaagaaagagagaaaattgattattacgaggtttcccacagaatta 239
Query: 891 aggaaacagt 900
||||||||||
Sbjct: 240 aggaaacagt 249
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7949
Number of Sequences: 1807
Number of extensions: 7949
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 2
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)