BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC08FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1425 1580 0.0
>3x_Contig1425
Length = 7919
Score = 1580 bits (797), Expect = 0.0
Identities = 838/847 (98%), Gaps = 4/847 (0%)
Strand = Plus / Minus
Query: 89 cgatatctttgtcaacggctggccttttgaaaggtcatctataataattgtgattcttgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4770 cgatatctttgtcaacggctggccttttgaaaggtcatctataataattgtgattcttgt 4711
Query: 149 atatagctttaatcccgtagatttcactagttcatcaaaatgcgatagatcgataggatt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4710 atatagctttaatcccgtagatttcactagttcatcaaaatgcgatagatcgataggatt 4651
Query: 209 catatcattgtttgattttgggaatttatcctgttggtttactgtgaaatttaaagctat 268
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4650 catatcattgattgattttgggaatttatcctgttggtttactgtgaaatttaaagctat 4591
Query: 269 gtgagtgtaccctagtgtatgcaatgtcgctagagtcttgtgcagcgttttaatctcctt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4590 gtgagtgtaccctagtgtatgcaatgtcgctagagtcttgtgcagcgttttaatctcctt 4531
Query: 329 cgtggaaggcggtgttgcaaaatccttctgtggccaaggaacgtttaaatcaactaacat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4530 cgtggaaggcggtgttgcaaaatccttctgtggccaaggaacgtttaaatcaactaacat 4471
Query: 389 cctttcaaatagctattttgctttgcaaatttggaaggagtatttacaagtgattcaaca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4470 cctttcaaatagctattttgctttgcaaatttggaaggagtatttacaagtgattcaaca 4411
Query: 449 gaaacttttgtttccatttgagtgtccagcatacctcatctcatgctcatgtttcattat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4410 gaaacttttgtttccatttgagtgtccagcatacctcatctcatgctcatgtttcattat 4351
Query: 509 ttactagattttttttttggtagattattgtaatgtcttttccgaaaaaattatacttga 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4350 ttactagattttttttttggtagattattgtaatgtcttttccgaaaaaattatacttga 4291
Query: 569 agatattataacatactatgaagtacaatccttacttgaaagcccaactgttgaaaaata 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4290 agatattataacatactatgaagtacaatccttacttgaaagcccaactgttgaaaaata 4231
Query: 629 caactttaaacttcatccaatcggccatgtcacaatgtttttgagtatgagaacaatatt 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4230 caactttaaacttcatccaatcggccatgtcacaatgtttttgagtatgagaacaatatt 4171
Query: 689 atctaaatagaataattgtcagtttatttatagagtacataccttactatttgttccata 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4170 atctaaatagaataattgtcagtttatttatagagtacataccttactatttgttccata 4111
Query: 749 aagtgataaaatgtccgttaaaataggtttgatgaaaaacagcgccc-aaaaggaaccat 807
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4110 aagtgataaaatgtccgttaaaataggtttgatgaaaaacagcgcccaaaaaggaaccat 4051
Query: 808 tatgatctatgtgcataaatatcattgcgtagagttcacatcttnctgaatcttttcgta 867
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 4050 tatgatctatgtgcataaatatcattgcgtagagttcacatctt-ctgaatctttcggta 3992
Query: 868 aagaaggtnnagtgctgatcttgatttacagctaccgccccagtagcatgggtttgtatt 927
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3991 aagaaggt-aagtgctgatcttgatttacagctaccgccccagtagcat-ggtttgtatt 3934
Query: 928 ttcntca 934
||| |||
Sbjct: 3933 ttcttca 3927
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8146
Number of Sequences: 1807
Number of extensions: 8146
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)