BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC08RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig614 1275 0.0
>3x_Contig614
Length = 2043
Score = 1275 bits (643), Expect = 0.0
Identities = 724/745 (97%), Gaps = 5/745 (0%)
Strand = Plus / Minus
Query: 46 tactattctcattgcatctgcatgaacggtagaagatgaaatatcaacttctggtggctg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1429 tactattctcattgcatctgcatgaacggtagaagatgaaatatcaacttctggtggctg 1370
Query: 106 taacggcactgcagaacccataggaggcttgatagacttcgattgttgttgaaaatgtgg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1369 taacggcactgcagaacccataggaggcttgatagacttcgattgttgttgaaaatgtgg 1310
Query: 166 tagcatcgcagacaattgctgcagtggaagtagattgctcaaagctgggtcacttatagc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1309 tagcatcgcagacaattgctgcagtggaagtagattgctcaaagctgggtcacttatagc 1250
Query: 226 agtcgcaacgatatcagcggtagaattgggcaaagcagtaccacttgtctctgctagcac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1249 agtcgcaacgatatcagcggtagaattgggcaaagcagtaccacttgtctctgctagcac 1190
Query: 286 ttgcgtagcgctgactttattgccgttgttcatctctgagatagaataaacacattccgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1189 ttgcgtagcgctgactttattgccgttgttcatctctgagatagaataaacacattccgt 1130
Query: 346 gctaagtgcgacacattttgaacatggattacctctgtcacatcgagtttttctcctacg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1129 gctaagtgcgacacattttgaacatggattacctctgtcacatcgagtttttctcctacg 1070
Query: 406 acaagcatagcacacgtatgagactctatttcgcttcataacacgtttgttaccagcatt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 acaagcatagcacacgtatgagactctatttcgcttcataacacgtttgttaccagcatt 1010
Query: 466 gttcttattaacacccacggtactactagagttgttgcttgtattagaacttggtgtcga 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 gttcttattaacacccacggtactactagagttgttgcttgtattagaacttggtgtcga 950
Query: 526 cttatctatagtgctangctgactatgtgaatgggctgtgcgaataactctcatcagaag 585
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 949 cttatctatagtgctaggctgactatgtgaat-ggctgtgcgaataactctcatcagaag 891
Query: 586 ttagtgatccacgattattatcctgagaaacggtattccattccttttggtgccatgatc 645
| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 890 taggtgatccacgattattagcctgagaaacggtattccattcc-tttggtgccatgatc 832
Query: 646 agatatacaagtcacaatggtacctgtctattccaatggatacgnngttttttttgaatt 705
||||||||||||||||||||||||||||||||| | || ||||| |||||||||| |||
Sbjct: 831 agatatacaagtcacaatggtacctgtctattcgattgtatacg-tgttttttttgtatt 773
Query: 706 ctgttagtcgatcgaaaacc-atccatgaatgtgaagagattccttaataagtaaagaat 764
|||||||||||||||||||| |||||||| ||||| |||||| |||||||||||||| |
Sbjct: 772 ctgttagtcgatcgaaaaccaatccatgagtgtgatgagattacttaataagtaaagtaa 713
Query: 765 ttccttatc-aggattctttgtttt 788
|||| |||| | |||||||||||||
Sbjct: 712 ttccatatcgatgattctttgtttt 688
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,816
Number of Sequences: 1807
Number of extensions: 15816
Number of successful extensions: 419
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)