BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC09RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig246 1096 0.0
>3x_Contig246
Length = 1071
Score = 1096 bits (553), Expect = 0.0
Identities = 584/593 (98%), Gaps = 1/593 (0%)
Strand = Plus / Minus
Query: 42 aagcttttcactataatcaggtggttcattactgtctcgtgtttttccgtgctggttttt 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aagcttttcactataatcaggtggttcattactgtctcgtgtttttccgtgctggttttt 718
Query: 102 cctgattttatttttggttcatttaacagaggtctgttttaacagtcagagaaagatttt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 cctgattttatttttggttcatttaacagaggtctgttttaacagtcagagaaagatttt 658
Query: 162 atcataaggggctgaaattagctggatatatagtgcatccaaggattcaattttacaaga 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 atcataaggggctgaaattagctggatatatagtgcatccaaggattcaattttacaaga 598
Query: 222 gaattactgcgacttaaagctcttttggtgactagttcttcgctttgaatcaatcaaaga 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gaattactgcgacttaaagctcttttggtgactagttcttcgctttgaatcaatcaaaga 538
Query: 282 aaaaaattcagtaaaagaaccaatcaccaatgaagaaaacgtcgagaagtctgtcacttt 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 aaaaaattcagtaaaagaaccaatcaccaatgaagaaaacgtcgagaagtctgtcacttt 478
Query: 342 ttgatatacggctagaaggcactgaccatgatgtgatagtggttaagggaacggttgatg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttgatatacggctagaaggcactgaccatgatgtgatagtggttaagggaacggttgatg 418
Query: 402 aagcgccctcagttctactgagcggatccgtagttctttcagtgagagaacccatttatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aagcgccctcagttctactgagcggatccgtagttctttcagtgagagaacccatttatg 358
Query: 462 ccaaaaagatttctttgaccttgtatggtgtgattaagcttaaagtcactactatggtac 521
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 357 ccaaaaagatttctttgaccttgtatggtgtgattaagctaaatgtcactactatggtac 298
Query: 522 aaagtccctaggggacctgctccaagaaatgtgaaatccgattgacggttctacgagcta 581
|| || ||||||||||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct: 297 aaggt-cctaggggacctgctccaagaaatgtgaagtacgatagacggttctacgagcta 239
Query: 582 tcccttgacgatttagatcttcatcctcatctaggggatggatcgactgtcaa 634
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 238 tcccttgacgatatagatcttcatcctcatctagtggatggatcgactgtcaa 186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8218
Number of Sequences: 1807
Number of extensions: 8218
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)