BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC10FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1092 0.0
>3x_Contig1780
Length = 27883
Score = 1092 bits (551), Expect = 0.0
Identities = 594/605 (98%), Gaps = 4/605 (0%)
Strand = Plus / Minus
Query: 89 atctacttagagactatattccaactaaaaaaccgtactctttagattccctattagacg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5186 atctacttagagactatattccaactaaaaaaccgtactctttagattccctattagacg 5127
Query: 149 atttgttggattacgcaagtcaaagactccccattaatggtagattggctttctggatgc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5126 atttgttggattacgcaagtcaaagactccccattaatggtagattggctttctggatgc 5067
Query: 209 ccactgcctatgtattagaatgttgcaactataattcctcttcattcgaatttggaactg 268
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5066 ccactgccaatg-acgagaatgttgcaactataattcctcttcattcgaatttggaactg 5008
Query: 269 aagtataactgtgttcaagatttcaataaatggtctagaagattattggtgtatatcaat 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5007 aagtataactgtgttcaagatttcaataaatggtctagaagattattggtgtatatcaat 4948
Query: 329 agaggacacgaatttaatggacccaacaattctggtttgagtagaactggtaatttcaga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4947 agaggacacgaatttaatggacccaacaattctggtttgagtagaactggtaatttcaga 4888
Query: 389 gatagatacttcagcgggttcaattgatattattggacctgatataaggctaataataga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4887 gatagatacttcagcgggttcaattgatattattggacctgatataaggctaataataga 4828
Query: 449 catctgctcactctagcattacactataatatgtatcattagttaaaatacaaattaata 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4827 catctgctcactctagcattacactataatatgtatcattagttaaaatacaaattaata 4768
Query: 509 tttataaaatcgatattattacatttattatacacaaagttacaatgactgacaatatta 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4767 tttataaaatcgatattattacatttattatacacaaagttacaatgactgacaatatta 4708
Query: 569 tacaatattatacatattccttgcatatcatctttcactgccaanacttggtatcatgac 628
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 4707 tacaatattatacatattccttgcatatcatcttccactgccaatacttggtatcatgac 4648
Query: 629 gctataacttgaaattcattactaagtgcagcaagcaaactcgtggagcctgcgtattga 688
||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||
Sbjct: 4647 gctataacttgaaattcattactaagtgcagcagg--aactcgtggagcctgggt-ttga 4591
Query: 689 accat 693
|||||
Sbjct: 4590 accat 4586
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7172
Number of Sequences: 1807
Number of extensions: 7172
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)