BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC7ZC10RM1.SCF screened BAC_end
         (935 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1424                                                        1215   0.0  

>3x_Contig1424 
          Length = 9842

 Score = 1215 bits (613), Expect = 0.0
 Identities = 673/685 (98%), Gaps = 6/685 (0%)
 Strand = Plus / Plus

                                                                        
Query: 50   tcagaacttaagaaacaa-gggctaaaaagagtggaaattatgaatttagtgacaacgag 108
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8732 tcagaacttaagaaacaaagggctaaaaagagtggaaattatgaatttagtgacaacgag 8791

                                                                        
Query: 109  tctgaagatgattacagaagcgaagatgatagccgtggccgaagaagaagaggcgattat 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8792 tctgaagatgattacagaagcgaagatgatagccgtggccgaagaagaagaggcgattat 8851

                                                                        
Query: 169  gacgacgaagaagaggaagagtcggaatacgatgaggaagaagatgactatgatctgggc 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8852 gacgacgaagaagaggaagagtcggaatacgatgaggaagaagatgactatgatctgggc 8911

                                                                        
Query: 229  tatgaaaaatcaaagacccgcggaagagagcgcgcagatattcatgaagtagaatgggct 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8912 tatgaaaaatcaaagacccgcggaagagagcgcgcagatattcatgaagtagaatgggct 8971

                                                                        
Query: 289  gaagatgacaatttggacagggagtcttcccttgatgattataataaaatacaaattggc 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8972 gaagatgacaatttggacagggagtcttcccttgatgattataataaaatacaaattggc 9031

                                                                        
Query: 349  cgttcctttgtcgctaaattttgcttctatccccatttcaacaagatagtggaaggatgc 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9032 cgttcctttgtcgctaaattttgcttctatccccatttcaacaagatagtggaaggatgc 9091

                                                                        
Query: 409  tacggtagagtgaacattggtaaggacaagcacacaggtaattcaatgtatcgtatggta 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9092 tacggtagagtgaacattggtaaggacaagcacacaggtaattcaatgtatcgtatggta 9151

                                                                        
Query: 469  aaaattgaacgtgtatttttacaaaaaccatacaacatgggtaaattctttactaatcaa 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9152 aaaattgaacgtgtatttttacaaaaaccatacaacatgggtaaattctttactaatcaa 9211

                                                                        
Query: 529  tattttggtgtcactcaaagcaaagacagaaaaattttccagatgagctatttcagtgat 588
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9212 tattttggtgtcactcaaggcaaagacagaaaaattttccagatgagctatttcagtgat 9271

                                                                        
Query: 589  agtcctgtcactcaaccagaatacgaagccgtatttacctttttttggaaaaatacgaca 648
            ||||||||||||||||||||||||| |||  |||||| |||| |||||||||||||||||
Sbjct: 9272 agtcctgtcactcaaccagaatacg-agcgttattta-ctttctttggaaaaatacgaca 9329

                                                                        
Query: 649  ttacacagccttcaccctatattctaaataacaagtcccagggcagtaaatggaattcgt 708
            |||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 9330 ttacacagccttcaccctatattctaaataacaagt-ccaaggcagtaaat-gaattcgt 9387

                                     
Query: 709  atgcgaaacctctcacaccggaatt 733
            ||||| |||||||||||||| ||||
Sbjct: 9388 atgcg-aacctctcacaccgaaatt 9411


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8388
Number of Sequences: 1807
Number of extensions: 8388
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)