BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1532 0.0
>3x_Contig1771
Length = 25932
Score = 1532 bits (773), Expect = 0.0
Identities = 834/847 (98%), Gaps = 6/847 (0%)
Strand = Plus / Plus
Query: 91 agacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggcaaagc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18862 agacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggcaaagc 18921
Query: 151 aagtgacatttataagatgttaaagtgcagtatagtggtgataatatttaagtttcttac 210
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 18922 aagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagtttcttac 18981
Query: 211 aaan-aaatgagtgtaggtatataaaaataatttataggtagaaacacacaaaacagaag 269
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18982 aaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaaacagaag 19041
Query: 270 agaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaacaaaga 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19042 agaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaacaaaga 19101
Query: 330 aaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttgtatat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19102 aaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttgtatat 19161
Query: 390 taaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctcttctttttt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19162 taaaaattgatcaattagaaacaaatgaatatggtttgttcgtcttccctcttctttttt 19221
Query: 450 tttggatctttacttctgccaattaacggttgtaaacaattcccatcgcctaataataat 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19222 tttggatctttacttctgccaattaacggttgtaaacaattcccatcgcctaataataat 19281
Query: 510 atcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaagttggagataaggggg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19282 atcctcaaagctcagtcctctgtttcaaggtaaattcaaatgaagttggagataaggggg 19341
Query: 570 tgaagagtgggtttggggcgtgcgtgtctttatttacaagacgacacacttctttttttt 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19342 tgaagagtgggtttggggcgtgcgtgtctttatttacaagacgacacacttctttttttt 19401
Query: 630 gctagacttagtcttaggtttgctcttaccttgtttaccgaccaaagaagctcttgtagc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19402 gctagacttagtcttaggtttgctcttaccttgtttaccgaccaaagaagctcttgtagc 19461
Query: 690 agcctcgaagacttctctgacaccgtaaccggtcttggcagaacattcgatgtagtcaac 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19462 agcctcgaagacttctctgacaccgtaaccggtcttggcagaacattcgatgtagtcaac 19521
Query: 750 agcaccgatttggtcagcgacttcttgtgcttgagcctgaga-acaggttgtaatccttg 808
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 19522 agcaccgatttggtcagcgacttcttgtgcttgagcctgagacacaggttgtaatccttg 19581
Query: 809 agctcttagttcttcaac-acttgaggatcatttctcaaatctgctttac-accaaccag 866
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 19582 agctcttagttcttcaacaacttgaggatcatttctcaaatctgctttacaaccaaccaa 19641
Query: 867 natgattggaacacctttgac-aaagtgtaaaacttcagagatccatttttccatcacgt 925
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 19642 gatgattggaacacc-ttgacaaaagtgtaaaacttcagagatccatttttccatcacgt 19700
Query: 926 ttcctaa 932
|| ||||
Sbjct: 19701 tttctaa 19707
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9113
Number of Sequences: 1807
Number of extensions: 9113
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)