BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC12FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1552 1267 0.0
>3x_Contig1552
Length = 11268
Score = 1267 bits (639), Expect = 0.0
Identities = 754/787 (95%), Gaps = 4/787 (0%)
Strand = Plus / Plus
Query: 83 tacaatcttacaaataccaaggaagcactgcatgctgtgcagcaattgtcattaaacgga 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9426 tacaatcttacaaataccaaggaagcactgcatgctgtgcagcaattgtcattaaacgga 9485
Query: 143 ggcattggcagagaaaacttgttttttgtagattcagtcgttaagagaagaaatttctgt 202
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 9486 ggcattggcagagaaaacttgttaacag-agattcagtcgttaagagaagaaatttctgt 9544
Query: 203 gttaaaattgtcggcttaaaa-ccaaaccaactagaacctgagaatctattaattaacac 261
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9545 gttaaaattgtcggcagaaaaaccaaaccaactagaacctgagaatctattaattaacac 9604
Query: 262 agcttctacatcgttgccccttctcgaaactactttggagttatatacaagggctcaatt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9605 agcttctacatcgttgccccttctcgaaactactttggagttatatacaagggctcaatt 9664
Query: 322 aggagattttttctcatctaaactgtctacgtaatgtgtagaacgaaatggtccagttga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9665 aggagattttttctcatctaaactgtctacgtaatgtgtagaacgaaatggtccagttga 9724
Query: 382 atacgctaaataattgcttgcatccaccttttcaaaccttaattaagccattattaaagc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9725 atacgctaaataattgcttgcatccaccttttcaaaccttaattaagccattattaaagc 9784
Query: 442 aagatgtttcctgaactctttaattagaacatcattttcttgcttagtaccaatggtgat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9785 aagatgtttcctgaactctttaattagaacatcattttcttgcttagtaccaatggtgat 9844
Query: 502 tcttaaaccacctgcgcagccaggctcattacctctatatcttgttataacagctgattc 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9845 tcttaaaccacctgcgcagccaggctcattacctctatatcttgttataacagctgattc 9904
Query: 562 aacggcaagcctttcatatagcttcttagtcaaagcgttgtctccatgggtgatgtttat 621
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 9905 aacggcaagcctttcatatagcttcttagtcaaagcgttgtctccattgttgatgtttaa 9964
Query: 622 atagatgaaattagcgcctaggccacccaattgggaaacatatggagaagaagtcaactt 681
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9965 taagatgaaattagcgtctaggccacccaattgggaaacatatggagaagaagtcaactc 10024
Query: 682 cttcaacactcttaatttttcctttttaactggggcagcattcttttccatcaattt-aa 740
|||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||
Sbjct: 10025 cttcaacactctcaatttttcctttttaactgtggcagcattctcttccatcaatttcaa 10084
Query: 741 gttttttggttgtactgtcttcaaagcaacttctgcagtcgagcaa-aaatataataggg 799
||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||
Sbjct: 10085 gttttttggttgtactgctttcaaagcaacttctgcagtcgagcaagaaatattataagg 10144
Query: 800 acccttcattgaattcaagacttttgacataactttagatgtttacctaacttctagttt 859
| ||||||| |||||||||||| |||||||| |||||||||| ||| ||||| ||||| |
Sbjct: 10145 agccttcatcgaattcaagactcttgacatagctttagatgtatacgtaactcctagtct 10204
Query: 860 aattcca 866
||||||
Sbjct: 10205 gattcca 10211
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7797
Number of Sequences: 1807
Number of extensions: 7797
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)