BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZC12RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1128 1326 0.0
>3x_Contig1128
Length = 4759
Score = 1326 bits (669), Expect = 0.0
Identities = 758/779 (97%), Gaps = 7/779 (0%)
Strand = Plus / Plus
Query: 48 cgaaaacgataacgttgacaccccagcctctcatagcacaaataccatcagcccaaaatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3965 cgaaaacgataacgttgacaccccagcctctcatagcacaaataccatcagcccaaaatt 4024
Query: 108 gcttagcgttatctagacctgggtaagcactttcaaagttggtaccatcggttggccagc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4025 gcttagcgttatctagacctgggtaagcactttcaaagttggtaccatcggttggccagc 4084
Query: 168 cagtttcaccaacccagaattgaatgtcagtagaacccttggtagtttgtttagtttgta 227
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4085 cagtttcaccaacccagaattgaatgtcagtagaacccttggtagtttggatagtttgta 4144
Query: 228 gagcttgcatgatatcgtcgaagaacgagtaagaagcattatccatagtttgaccttgcc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 gagcttgcatgatatcgtcgaagaacgagtaagaagcattatccatagtttgaccttgcc 4204
Query: 288 agtaagagaaggcgttcgccatgacaaagtcagcagcttgaatggcggtagcagatccac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4205 agtaagagaaggcgttcgccatgacaaagtcagcagcttgaatggcggtagcagatccac 4264
Query: 348 catcgaccaaaacgttccatgagtcaacagtaccgacttgcttgccactgtaagagttac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4265 catcgaccaaaacgttccatgagtcaacagtaccgacttgcttgccactgtaagagttac 4324
Query: 408 catcggaatccttgatgtctttaatgtagtccttgacatcagagatagcatctgccaatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4325 catcggaatccttgatgtctttaatgtagtccttgacatcagagatagcatctgccaatt 4384
Query: 468 cagaagcagtcatatcttcacggtacaaagcttcggaaccaaccaagaaggcttcgatgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4385 cagaagcagtcatatcttcacggtacaaagcttcggaaccaaccaagaaggcttcgatgg 4444
Query: 528 tagaagttttgatccatggcaagtattgagtcaaagcttgcttttcttctt-gaaatgag 586
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 4445 tagaagttttgatccatggcaagtattgagtcaaagcttgcttttcttcttcgaaatgag 4504
Query: 587 cagaatcagttggccaaatacccaag-aaatggtaaatccggcttcttctgcagcaggac 645
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 4505 cagaatcagttggccaaatacccaagaaaatggtaaatccggcttcttctgcagcaggac 4564
Query: 646 ccanaatttgtaaagtgttacaatcagaagcagcatatactttgacctttgaagtgtaac 705
||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 4565 ccaaaatttgtaaagtgttacaatcagaagcagcatatactttgaccttggaggtgtaac 4624
Query: 706 ccttc-aagtttcgaaatcagctaaataatcatcccttttgcttacaagaa-cattgttg 763
||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| || |
Sbjct: 4625 ccttcaaagtttcgaaatcagctaaataatcat-ccttttgcttacaagaaccatcgtgg 4683
Query: 764 ggtctttaacacctaagttggatgcaagctttaccacagcaagcaacagttggagcacc 822
|||| |||||||||||| || ||||||||| | ||||| |||||||||| |||||||
Sbjct: 4684 ggtc-ttaacacctaagntgaatgcaagctcaccaacagc-agcaacagtttgagcacc 4740
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6122
Number of Sequences: 1807
Number of extensions: 6122
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)