BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD01RM1.SCF screened BAC_end
(971 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig454 991 0.0
3x_Contig950 252 1e-66
>3x_Contig454
Length = 2260
Score = 991 bits (500), Expect = 0.0
Identities = 574/596 (96%), Gaps = 2/596 (0%)
Strand = Plus / Minus
Query: 126 tattgaacgtaatattattgttgaagacgaagataaggttatcactaattccgctttgga 185
||||||| ||||||||||||||||||| |||||||||||||| | ||||| | ||||||
Sbjct: 2009 tattgaaagtaatattattgttgaagaagaagataaggttataaataattaagatttgga 1950
Query: 186 gtctttgattagagagcatcaatcgttcattgacaaaataaactctattaaatgctgtga 245
|| ||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 1949 gtatttgattagagagaataaatagttaattgacaaaataaactctattaaatgctgtga 1890
Query: 246 cataattaacccattagttgatatattctatcagagtccagaagccgttcgcgcaacctg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 cataattaacccattagttgatatattctatcagagtccagaagccgttcgcgcaacctg 1830
Query: 306 ggtaaatgtgttccctgttgcttataaatcgataccgaggaatgaaaagtacggctttgt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 ggtaaatgtgttccctgttgcttataaatcgataccgaggaatgaaaagtacggctttgt 1770
Query: 366 aagatcattggtcgctcttctatctaaagattatcataccaaacaggcgtcaatacatgt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 aagatcattggtcgctcttctatctaaagattatcataccaaacaggcgtcaatacatgt 1710
Query: 426 taatgtcataagtacaatgttagaatcggtaagcaaaattgaatcgttagaacttccacc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 taatgtcataagtacaatgttagaatcggtaagcaaaattgaatcgttagaacttccacc 1650
Query: 486 tcatctagtaagatatttgggaattacgttcaatgcatggtatcaatcaatcgacttact 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 tcatctagtaagatatttgggaattacgttcaatgcatggtatcaatcaatcgacttact 1590
Query: 546 tgaacagattcaagaaacattcaatatcgataatagtaaaattctagatacaaacgaaga 605
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 tgaacagattcaagaaacatccaatatcgataatagtaaaattctagatacaaacgaaga 1530
Query: 606 tgctttgcttgagttatactcgagtattcaggaagacgatatgttctatggattatggga 665
||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||
Sbjct: 1529 tgctttgcttgagttatactcgagtatacaagaagacgatatgttctatggattat-gga 1471
Query: 666 gataaaaggcaaagtccacagaatctagcataactttattcggatgaacaaatcgg 721
|| ||||||||||| |||||||||||||||| ||||| ||| |||||||||||||
Sbjct: 1470 gaagaaaggcaaagtacacagaatctagcatagcttta-tcgtatgaacaaatcgg 1416
>3x_Contig950
Length = 3159
Score = 252 bits (127), Expect = 1e-66
Identities = 162/167 (97%), Gaps = 5/167 (2%)
Strand = Plus / Minus
Query: 49 cagttacttttcggagcatgtgtcatggaacatagaattaaactcactgagcacttccca 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cagttacttttcggagcatgtgtcatggaacatagaattaaactcactgagcacttccca 103
Query: 109 ctatctccactaagcgctattgaacgtaatattattgttgaagacgaagataaggttatc 168
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 102 ctatctccactaagcgctattgaacgt-atattattgttgaagacg-agataagg-tatc 46
Query: 169 actaattccgctttggagtctttgattagagagcatcaatcgttcat 215
|||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 45 actaattccgctttggagtc-ttgattagagag-atcaatcgttcat 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,430
Number of Sequences: 1807
Number of extensions: 11430
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 971
length of database: 10,358,551
effective HSP length: 16
effective length of query: 955
effective length of database: 10,329,639
effective search space: 9864805245
effective search space used: 9864805245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)