BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD02RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1249 1235 0.0
>3x_Contig1249
Length = 5939
Score = 1235 bits (623), Expect = 0.0
Identities = 710/733 (96%), Gaps = 5/733 (0%)
Strand = Plus / Minus
Query: 39 aacttgactgctgacatatggggtgttaacgtccaaactttgtctggttctccagctaac 98
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5348 aacttgactgctgacaaatggggtgttaacgtccaaactttgtctggttctccagctaac 5289
Query: 99 ttgcaagtctaccaagccttgatgagacctcatgaaagattgatgggtttgttcttgcca 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5288 ttgcaagtctaccaagccttgatgagacctcatgaaagattgatgggtttgttcttgcca 5229
Query: 159 gatggtggtcatttgtctcacggttaccaaactgaaaacagaaagatttctgctgtctcc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5228 gatggtggtcatttgtctcacggttaccaaactgaaaacagaaagatttctgctgtctcc 5169
Query: 219 acttacttcgaatctttcccatacagagttgatccaaagactggtatcatcgactatgac 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5168 acttacttcgaatctttcccatacagagttgatccaaagactggtatcatcgactatgac 5109
Query: 279 actttggaaaagaatgccatcttgtacagaccaaagatcttggttgctggtacttctgca 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5108 actttggaaaagaatgccatcttgtacagaccaaagatcttggttgctggtacttctgca 5049
Query: 339 tactgtcgtttgatcgactacaagagaatgagagaaatcgccgacaaggttggtgcttac 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5048 tactgtcgtttgatcgactacaagagaatgagagaaatcgccgacaaggttggtgcttac 4989
Query: 399 ttgatggttgacatggctcacatctctggtttgatcgctgctggtgttattccatctcca 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4988 ttgatggttgacatggctcacatctctggtttgatcgctgctggtgttattccatctcca 4929
Query: 459 ttcgaatacgctgacattgtcactaccactactcacaagtccttgcgtggtccaagaggt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4928 ttcgaatacgctgacattgtcactaccactactcacaagtccttgcgtggtccaagaggt 4869
Query: 519 gctatgatcttcttcagaagaggtatcagatctgttaacccaaagactggntaggatatc 578
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 4868 gctatgatcttcttcagaagaggtatcagatctgttaacccaaagactggtaaggaaatc 4809
Query: 579 ccatacgatttggaaggtncaatcaacttcttcgtctttcccagtcaccaaagtggtgca 638
|||||||||||||||||| |||||||||||| |||||| || |||||||| ||||| ||
Sbjct: 4808 ccatacgatttggaaggtccaatcaacttctccgtcttcccaggtcaccaaggtggtcca 4749
Query: 639 cacatccataccatttctggcttggctactgctttgaaacaagccaacactccag-attc 697
|||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct: 4748 cacaaccataccatctctgccttggctactgctttgaagcaagccaacactccagaattc 4689
Query: 698 aaagagtaccaaact-aagtcttgaag-acgctaaggttctag-agattcctt-aagaaa 753
|| |||||||||||| ||||||||||| ||||||||||||||| ||| ||||| |||||
Sbjct: 4688 aaggagtaccaaactcaagtcttgaagaacgctaaggttctagaagagtccttcaagaag 4629
Query: 754 ttgggttacagat 766
|||||||||||||
Sbjct: 4628 ttgggttacagat 4616
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6555
Number of Sequences: 1807
Number of extensions: 6555
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)