BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD03FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 1128 0.0
>3x_Contig1619
Length = 7770
Score = 1128 bits (569), Expect = 0.0
Identities = 597/605 (98%), Gaps = 1/605 (0%)
Strand = Plus / Minus
Query: 88 ctcactgttaatgagatgatataggttcaattcctattaaagacttaattattgtataat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4580 ctcactgttaatgagatgatataggttcaattcctattaaagacttaattattgtataat 4521
Query: 148 atgtaggggttatagttaaatttggtagaacgaatgctttgcatgcatttaatatgagtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4520 atgtaggggttatagttaaatttggtagaacgaatgctttgcatgcatttaatatgagtt 4461
Query: 208 caagtctcatttacttcattatatataa-tccccgcgacctcctcaccggtatataccgg 266
||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4460 caagtctcattaactccattatatataactccccgcgacctcctcaccggtatataccgg 4401
Query: 267 tgaggaggtcgcggggagcatagaaactataattcaatcggttagaatagtattttgata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4400 tgaggaggtcgcggggagcatagaaactataattcaatcggttagaatagtattttgata 4341
Query: 327 aggtaccaatataggttcaattcctattagtttcatatatatttaaatggatggttgact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4340 aggtaccaatataggttcaattcctattagtttcatatatatttaaatggatggttgact 4281
Query: 387 gagtggtttaaggtgtaatacttgagatattataagtcttttaggcttcgtaggttcaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4280 gagtggtttaaggtgtaatacttgagatattataagtcttttaggcttcgtaggttcaaa 4221
Query: 447 tcctacatcattcgtatataatataatactaatatatagtattatatattacccacgcca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4220 tcctacatcattcgtatataatataatactaatatatagtattatatattacccacgcca 4161
Query: 507 cctgatactattagtatcaggtggctttaataattcattgaattatttacgaaatatata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4160 cctgatactattagtatcaggtggctttaataattcattgaattatttacgaaatatata 4101
Query: 567 tattatatatattatatatttatatatatataatatagcaccatatttttatttttcccc 626
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4100 tattatatatattatatatttatatatatataatatattattatatttttatttttcccc 4041
Query: 627 ccgcggtttctcaccctacattcgtagggtgaggagccgtggggaatattataattatat 686
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4040 ccgcggtttctcaccctacattcgtagggtgaggagccgcggggaatattataattatat 3981
Query: 687 agttt 691
|||||
Sbjct: 3980 agttt 3976
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,486
Number of Sequences: 1807
Number of extensions: 12486
Number of successful extensions: 857
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)