BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD03RM1.SCF screened BAC_end
(983 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 1193 0.0
>3x_Contig1619
Length = 7770
Score = 1193 bits (602), Expect = 0.0
Identities = 704/729 (96%), Gaps = 8/729 (1%)
Strand = Plus / Plus
Query: 38 ctcagccttanattcaaggagtatcaagtatacccatcattaaaagatacattattccca 97
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 985 ctcagcctta-attcaaggagtatcaagaa-acccatcattaaaagatacattattccca 1042
Query: 98 ttcgcaattttaggataaagagtgagtcctatttttcttatttatcccataatcttatta 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 ttcgcaattttaggataaagagtgagtcctatttttcttatttatcccataatcttatta 1102
Query: 158 agattatgggatataattagaatataaaattgggtgaattgcaagaaactcctagtattt 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1103 agattatgggatataattagaatataaaattgggtgaattgcaagaaactcctagtattt 1162
Query: 218 aataattatattaaatatggacaatttgcagcgaagtttataacaacctatattatatta 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 aataattatattaaatatggacaatttgcagcgaagtttataacaacctatattatatta 1222
Query: 278 ttatataataaccccacgcggctcgtccaaccctacggttagacgatgccgcgtggggag 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1223 ttatataataaccccacgcggctcgtccaaccctacggttagacgatgccgcgtggggag 1282
Query: 338 ttataaaaacgttcaacgactagataatgagttaggttaacaataatttatccacgagcg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1283 ttataaaaacgttcaacgactagataatgagttaggttaacaataatttatccacgagcg 1342
Query: 398 cccaatatcaaatagattatatttgataatgacatagtctgaacaatatagaaatatatt 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1343 cccaatatcaaatagattatatttgataatgacatagtctgaacaatatagaaatatatt 1402
Query: 458 gagctaatatattaaataaatattaggccaacatatacagttgctttatcagaagctaca 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 gagctaatatattaaataaatattaggccaacatatacagttgctttatcagaagctaca 1462
Query: 518 ggattattctgtttaatgatttcattcttattattatacgctgtataataataatataat 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 ggattattctgtttaatgatttcattcttattattatacgctgtataataataatataat 1522
Query: 578 gaattatctattataaaaaaattctttttcatctttgggcaatgcctcccgggatatata 637
||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 gaaatatctataataaaaatattctttttcatctttgggcaatgcctcccgggatatata 1582
Query: 638 tataatataatatatgtatatagtgatatatcctattaattattaccaattggctaaccc 697
||||||||||||||| |||||| | |||||| ||||| |||||||||||||| || |
Sbjct: 1583 tataatataatatatatatata-ttatatat-ctatt-attattaccaattgcgta--ct 1637
Query: 698 ccctttttgtagtaatctgcgaatagatattttattataccattaaatttattttcaaga 757
|| | |||||||| ||||||| ||||||| ||||||||| | |||||||||| ||||||
Sbjct: 1638 cctctcttgtagtagtctgcgagtagatatattattatacta-taaatttattatcaaga 1696
Query: 758 attactctt 766
|||||||||
Sbjct: 1697 attactctt 1705
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,027
Number of Sequences: 1807
Number of extensions: 18027
Number of successful extensions: 167
Number of sequences better than 1.0e-20: 1
length of query: 983
length of database: 10,358,551
effective HSP length: 16
effective length of query: 967
effective length of database: 10,329,639
effective search space: 9988760913
effective search space used: 9988760913
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)