BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD04FM1.SCF screened BAC_end
(856 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 763 0.0
>3x_Contig1771
Length = 25932
Score = 763 bits (385), Expect = 0.0
Identities = 427/436 (97%), Gaps = 4/436 (0%)
Strand = Plus / Plus
Query: 92 agacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggcaaagc 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18862 agacattaaaaaatacaaggtttaatcaatgtaaaagaagcgcttgggttgtggcaaagc 18921
Query: 152 aagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagtttcttac 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18922 aagtgacatttataagatgagaaagtgcagtatagtggtgataatatttaagtttcttac 18981
Query: 212 aaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaaacagaag 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18982 aaaataaaagagtgtaggtatataaaaataatttataggtagaaacacacaaaacagaag 19041
Query: 272 agaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaacaaaga 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19042 agaggtagaagagaaaatgtcagggagggatggtcacttgaaaccagatggaaacaaaga 19101
Query: 332 aaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttgtatat 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19102 aaagaacgaggagaaaaaattaggaaattcaacggaaattaattgctgacatttgtatat 19161
Query: 392 taaaaattgatcaattagaaacanatgaatatggttttgttcgtcttcccttcttctttt 451
||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct: 19162 taaaaattgatcaattagaaacaaatgaatatgg-tttgttcgtcttccc-tcttctttt 19219
Query: 452 tttttggatctttacttctgccaattaacgggttgaaaacaattccccatcgcctaatta 511
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||| |
Sbjct: 19220 tttttggatctttacttctgccaattaac-ggttgtaaacaatt-cccatcgcctaataa 19277
Query: 512 taatttcctaaaagct 527
|||| |||| ||||||
Sbjct: 19278 taatatcctcaaagct 19293
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,479
Number of Sequences: 1807
Number of extensions: 37479
Number of successful extensions: 2005
Number of sequences better than 1.0e-20: 1
length of query: 856
length of database: 10,358,551
effective HSP length: 16
effective length of query: 840
effective length of database: 10,329,639
effective search space: 8676896760
effective search space used: 8676896760
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)