BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD04RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1535 1152 0.0
>3x_Contig1535
Length = 11102
Score = 1152 bits (581), Expect = 0.0
Identities = 649/665 (97%), Gaps = 5/665 (0%)
Strand = Plus / Plus
Query: 48 cattggagccggtagaggagaaacttaaccaacttcaattgagatataaatcagagaaag 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9736 cattggagccggtagaggagaaacttaaccaacttcaattgagatataaatcagagaaag 9795
Query: 108 ataccactgatgaagttaaagccaaagctaaattagcagaagcggaatacaataaaaatt 167
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9796 ataaaactgatgaagttaaagccaaagctaaattagcagaagcggaatacaataaaaatt 9855
Query: 168 atgatagaatggaacaagagcaatcgcaaagaagaatcctggaaaacacaatagatgagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9856 atgatagaatggaacaagagcaatcgcaaagaagaatcctggaaaacacaatagatgagt 9915
Query: 228 tggatggtcacattcgttgttttgcatatcttaattacgacgnaacttaatgactatgca 287
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9916 tggatggtcacattcgttgttttgcatatcttaattacgacg-aacttaatgactatgca 9974
Query: 288 gtagactatatgaacaaatgtattatcggagatacagatgtgttttactttagcagaatt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9975 gtagactatatgaacaaatgtattatcggagatacagatgtgttttactttagcagaatt 10034
Query: 348 cttccgagagacttagtatcaccttcaaaccttttcaataatgaatgcttcaccttcgtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10035 cttccgagagacttagtatcaccttcaaaccttttcaataatgaatgcttcaccttcgtc 10094
Query: 408 gattcgtgcttaaagagtaagaaaagttgtaatattatatcaataaacgatgatttgagg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10095 gattcgtgcttaaagagtaagaaaagttgtaatattatatcaataaacgatgatttgagg 10154
Query: 468 aaagatttcctacgaacgataaatgaacgatttttgaaatccaaagttcttgttcagatg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10155 aaagatttcctacgaacgataaatgaacgatttttgaaatccaaagttcttgttcagatg 10214
Query: 528 ggtgtattgaacgacagtgacctttcgaaggattta-taaattctgaggattctgattta 586
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 10215 gttgtattgaacgacagtgacctttcgaaggatttattaaattctgaggattctgattta 10274
Query: 587 tccgctgtcattgacgaaaaatgtattgatttccattcttaaagactaccgattgaaaga 646
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 10275 tccgctgtcattgacgaaaaatgtattgatttccattctaaaagactaccgattgaagaa 10334
Query: 647 atggataattttatacttccccgatttcaagagaattttatgttatgaaatttggaagtc 706
|| |||||||||||||| ||||||||| |||| | || |||||||||||||| ||||||
Sbjct: 10335 gtgaataattttatactt-cccgatttc-agaggaattcatgttatgaaattt-gaagtc 10391
Query: 707 ttcga 711
|||||
Sbjct: 10392 ttcga 10396
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,355
Number of Sequences: 1807
Number of extensions: 10355
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)