BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD06FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig990 1495 0.0
>3x_Contig990
Length = 3707
Score = 1495 bits (754), Expect = 0.0
Identities = 842/863 (97%), Gaps = 9/863 (1%)
Strand = Plus / Plus
Query: 87 attagttccactgatttgatgtatgcatttttctgcttgattgacttttcaagtttagtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 attagttccactgatttgatgtatgcatttttctgcttgattgacttttcaagtttagtc 1048
Query: 147 cctaggggagacactacctgagtaactgctgatagcttgtggtctaattggtcatagttc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1049 cctaggggagacactacctgagtaactgctgatagcttgtggtctaattggtcatagttc 1108
Query: 207 tgaacaatgtttttcaattgaccacgagaaaccatgatgctttttgcgtgactgatttcc 266
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1109 tgaacaatgtccttcaattgaccacgagaaaccatgatgctttttgcgtgactgatttcc 1168
Query: 267 atttgtgagacttgttgagtcaattggccggatctagacaatgtttccttctgtaacttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1169 atttgtgagacttgttgagtcaattggccggatctagacaatgtttccttctgtaacttt 1228
Query: 327 ttcaactcctttaagaccgactcgaaggttctaatgaagggtttggcatccaattgtttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1229 ttcaactcctttaagaccgactcgaaggttctaatgaagggtttggcatccaattgtttg 1288
Query: 387 ttttcgggtatcgaggcgttcactgcagcaggggcattctgtttggacgcttgatctttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1289 ttttcgggtatcgaggcgttcactgcagcaggggcattctgtttggacgcttgatctttg 1348
Query: 447 ctcaattctgttacgaattcattgacggttaagccacttagaaaattgtctgatgtaagt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1349 ctcaattctgttacgaattcattgacggttaagccacttagaaaattgtctgatgtaagt 1408
Query: 507 atttttttccatttgacatccaattcatatatagcattcatattgtactcgtattatgag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1409 atttttttccatttgacatccaattcatatatagcattcatattgtactcgtattatgag 1468
Query: 567 atatcctttggctgggtcgttattgctcttcaacggaagtcctgagtggttatttaggat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 atatcctttggctgggtcgttattgctcttcaacggaagtcctgagtggttatttaggat 1528
Query: 627 cccctttgaaaagttgtaaagaaagctcactgaactgaattcctgcaacaatagcgcttc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 cccctttgaaaagttgtaaagaaagctcactgaactgaattcctgcaacaatagcgcttc 1588
Query: 687 aaaagcttcaaacaaatgtttcttaatttatgaagtattntatggatacaatgcaagata 746
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1589 aaaagcttcaaacaaatgtttcttaatttatgaagtattttatggatacaatgcaagata 1648
Query: 747 gcagtaaaagtattgtaatgcagttccagtgagggtatcgtgatattgtattatcaaata 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 gcagtaaaagtattgtaatgcagttccagtgagggtatcgtgatattgtattatcaaata 1708
Query: 807 cttaattacctttaaaa--gctcttttctacatttgtttagtttccaaattttcgtaaat 864
|||||||||||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct: 1709 attaattacctttaaaaatttttttttttacatttgtttagtttccaaattttcgtaaat 1768
Query: 865 -atgggattta-tgaaaccaaaac-aacgtggacaa--cagtttactttc-atgttcgcg 918
|||||||||| |||||||||||| |||||| |||| ||||||||||| |||| |||
Sbjct: 1769 aatgggatttattgaaaccaaaacaaacgtgaacaaacaagtttactttcaatgtcggcg 1828
Query: 919 tcaaa-aacattaggtaggatct 940
||||| |||||||||||||||||
Sbjct: 1829 tcaaagaacattaggtaggatct 1851
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6942
Number of Sequences: 1807
Number of extensions: 6942
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)