BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD06RM1.SCF screened BAC_end
(995 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1072 0.0
>3x_Contig1755
Length = 22936
Score = 1072 bits (541), Expect = 0.0
Identities = 578/589 (98%), Gaps = 1/589 (0%)
Strand = Plus / Minus
Query: 48 ccagactttagcaggggtaaaccaatagttctaaagatggaccttgataaacaatttccc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1918 ccagactttagcaggggtaaaccaatagttctaaagatggaccttgataaacaatttccc 1859
Query: 108 ttagttcaaataaatgccataattacaaatttatcatccgtattgtccttatttgacgaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1858 ttagttcaaataaatgccataattacaaatttatcatccgtattgtccttatttgacgaa 1799
Query: 168 ttacagcaactttccgaattacacgatatgaaacttgatgatattcatacttttcacaat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1798 ttacagcaactttccgaattacacgatatgaaacttgatgatattcatacttttcacaat 1739
Query: 228 aaaattgggaaaatattggagttacttacacaatctattacattattacaaaatccttca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1738 aaaattgggaaaatattggagttacttacacaatctattacattattacaaaatcctcca 1679
Query: 288 cgagaattggtctttccgcataataacaacagcttcttaaacgacaacttctctgaatct 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 cgagaattggtctttccgcataataacaacagcttcttaaacgacaacttctctgaatct 1619
Query: 348 catgacatttgtgaatcagcacatcatttggtcaatatggaattagtgctattcaaaaac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 catgacatttgtgaatcagcacatcatttggtcaatatggaattagtgctattcaaaaac 1559
Query: 408 gagatttgcttggacattaggaatttgacaaaagtcattaaaaaaccctggagtgagatc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1558 gagatttgcttggacattaggaatttgacaaaagtcattaaaaaaccctggagtgagatc 1499
Query: 468 gattcgaaaactgggttatcattcagtgataaagtcagagacaggctgaatcaagacaga 527
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1498 gattcgaaaactgggttatcattcagtgataaagtcagagacaggctgaagcaagacaga 1439
Query: 528 aatggaaaaatcgcaaaaatccttaaggaagaatgcttgcaagttgaacaaacatttatg 587
||||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 1438 aatggaaaaatcgcagagatccttaaggaagaaggcttgcaagttgaacaaacatctatg 1379
Query: 588 ataaacaatttgatattccatttttttagcaactgaaataataactctt 636
||||||||||||||| |||| ||||| ||||||||||| ||| ||||||
Sbjct: 1378 ataaacaatttgata-tccagtttttcagcaactgaaagaatcactctt 1331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9092
Number of Sequences: 1807
Number of extensions: 9092
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 995
length of database: 10,358,551
effective HSP length: 16
effective length of query: 979
effective length of database: 10,329,639
effective search space: 10112716581
effective search space used: 10112716581
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)