BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD07FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig625 1277 0.0
>3x_Contig625
Length = 2660
Score = 1277 bits (644), Expect = 0.0
Identities = 699/716 (97%), Gaps = 1/716 (0%)
Strand = Plus / Minus
Query: 86 ctcaaaacgaatccgctgaagacaaggaaaactggattatcccaggtttcgttgggtccc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2087 ctcaaaacgaatccgctgaagacaaggaaaactggattatcccaggtttcgttgggtccc 2028
Query: 146 acaatgtgtggtagcatgactatcaacatctgcccacttctcatttttttttctaaatag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2027 acaatgtgtggtagcatgactatcaacatctgcccacttctcatttttttttctaaatag 1968
Query: 206 ctccataatatttttttaataggaatggtttgtatattataatgaatgttctttcagtga 265
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 ctccataatataaagttaataggaatggtttgtatattataatgaatgttctttcagtga 1908
Query: 266 ttaacaattgttaatgtccatcctaagtttttccttagtgtaataatgtcgatgccttaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1907 ttaacaattgttaatgtccatcctaagtttttccttagtgtaataatgtcgatgccttaa 1848
Query: 326 tctagcgccgactgacgcccatctgtatttttattggtgttgtcattcatggtagtgtgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1847 tctagcgccgactgacgcccatctgtatttttattggtgttgtcattcatggtagtgtgt 1788
Query: 386 gtttttttttttctgtatactttagaggagaacttcagtacctcattaagggcagccgct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1787 gtttttttttttctgtatactttagaggagaacttcagtacctcattaagggcagccgct 1728
Query: 446 ttattatgaggtatagcgcatcctcaactctgttcacttgcatgttttaaagttatttct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1727 ttattatgaggtatagcgcatcctcaactctgttcacttgcatgttttaaagttatttct 1668
Query: 506 actatctcttactttacctaaacggtacaattaacgacgcattgtacagttggtaccttc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1667 actatctcttactttacctaaacggtacaattaacgacgcattgtacagttggtaccttc 1608
Query: 566 gtaattacttaaataggtaatcacataggtgaaaaatattaaaaaaggtaaaaatgggaa 625
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1607 gtaattacttaaataggtaattacataggtgaaaaatattaaaaaaggtaaaaatgggaa 1548
Query: 626 caaaactgcaggagcgggtgagtaagcctacattaacctctccatgaaataatttgttat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1547 caaaactgcaggagcgggtgagtaagcctacattaacctctccatgaaataatttgttat 1488
Query: 686 aaatagagcggttctgaatcttatttggatcaaatgcgatccatattctgttaaaaaaga 745
|||||||||||||||||||||||||||| |||| || ||| ||||||| | |||||||||
Sbjct: 1487 aaatagagcggttctgaatcttatttggttcaattgtgatacatattcag-taaaaaaga 1429
Query: 746 ttagaacgaatcacatactacatcatcacaacacaggtaactactgtaacaaaaat 801
||||||||||||||| |||||| || ||||||||| | ||| ||||||||||||||
Sbjct: 1428 ttagaacgaatcacaaactacaacaacacaacacaagaaacaactgtaacaaaaat 1373
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,282
Number of Sequences: 1807
Number of extensions: 12282
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)