BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD07RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig625 944 0.0
>3x_Contig625
Length = 2660
Score = 944 bits (476), Expect = 0.0
Identities = 501/511 (98%), Gaps = 10/511 (1%)
Strand = Plus / Plus
Query: 46 aataaataataccttaatatctgatactacaaattgttctttatgctttgggttggataa 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 aataaataataccttaatatctgatactacaaattgttctttatgctttgggttggataa 145
Query: 106 acctccgcttcttcacgactcatttcggttgccatgcatcagtaaaggtcgttttctttt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 acctccgcttcttcacgactcatttcggttgccatgcatcagtaaaggtcgttttctttt 205
Query: 166 ccttcctttaggtccactcttagcgagcctaatccaatatcaacaatttacactgctgct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccttcctttaggtccactcttagcgagcctaatccaatatcaacaatttacactgctgct 265
Query: 226 gctgctgctaccactactagcacgactgcattgagctaacgacactcctcttgttcgtcg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gctgctgctaccactactagcacgactgcattgagctaacgacactcctcttgttcgtcg 325
Query: 286 ttcttactcactctttctctcctctcttatctgactcgcgcaagtacccttatcgttatc 345
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 326 ttcttactcactctttctctcctctcttatctgac----------acccttatcgttatc 375
Query: 346 atgatacagcttcttcttcatcttctaggcgaggaattggtcgaaacggaaaaaagaaaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgatacagcttcttcttcatcttctaggcgaggaattggtcgaaacggaaaaaagaaaa 435
Query: 406 attttcgctgggaaaagctttcgttgcttggtttaatggaagggcattatctttggcact 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 attttcgctgggaaaagctttcgttgcttggtttaatggaagggcattatctttggcact 495
Query: 466 ttgcgcaactgttaagcgagctataggtaaaagtcggaacggagagggccttgaaaagtg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ttgcgcaactgttaagcgagctataggtaaaagtcggaacggagagggccttgaaaagtg 555
Query: 526 gtaactcgcttagcattgagtgatgatagtt 556
|||||||||||||||||||||||||||||||
Sbjct: 556 gtaactcgcttagcattgagtgatgatagtt 586
Score = 426 bits (215), Expect = e-119
Identities = 270/282 (95%), Gaps = 5/282 (1%)
Strand = Plus / Plus
Query: 591 tattattattttcttttttttttccctttgcggttcttgtttcctgacggagatcactct 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tattattattttcttttttttttccctttgcggttcttgtttcctgacggagatcactct 670
Query: 651 ttcactaacagagttgttttgatgcttgtgcaaatattttgattagttgattgaccggac 710
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 671 ttcactaacagagttgttttgatgcttgtgcaaatattttgataagttgattgaccggac 730
Query: 711 cagaccgccttaa-ggaacggtctctttctttttccgg-tttcatttgcataagtttcca 768
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 731 cagaccgccttaagggaacggtctctttctttttccggttttcatttgcataagtttcca 790
Query: 769 ttcgagcaac-aatatgaaatgagatgtgggtgtttgggttgttattagg-atgatattt 826
|||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||
Sbjct: 791 ttcgagcaacaaatatgaaatgagatgtgggtgtttggg-tgttaataggaatgatattt 849
Query: 827 gcattaagtattttcagngattgtttaaatgtatgtaccaac 868
||||||||| |||||| |||||| |||||||||||| ||||
Sbjct: 850 gcattaagttatttcagtgattgtataaatgtatgtaacaac 891
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,201
Number of Sequences: 1807
Number of extensions: 10201
Number of successful extensions: 344
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)