BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD08FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1319 1493 0.0
>3x_Contig1319
Length = 7600
Score = 1493 bits (753), Expect = 0.0
Identities = 816/831 (98%), Gaps = 5/831 (0%)
Strand = Plus / Plus
Query: 87 taccgattcttatattggtgttaatcggttggttttgttcgttccccttctttctagtta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 taccgattcttatattggtgttaatcggttggttttgttcgttccccttctttctagtta 1612
Query: 147 tataagtttgaagtcaattctatcgtctcatagagaagatctctcactattccttacgtg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tataagtttgaagtcaattctatcgtctcatagagaagatctctcactattccttacgtg 1672
Query: 207 tttctaccactttatatcgttcttagcttctttgtaaaagcaaatcaaccaagaaactca 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 tttctaccactttatatcgttcttagcttctttgtaaaagcaaatcaaccaagaaactca 1732
Query: 267 tgtgatacacagaattttgtaaacactagctcctttcaatgggacaaagttcgatgcttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 tgtgatacacagaattttgtaaacactagctcctttcaatgggacaaagttcgatgcttt 1792
Query: 327 gaggtttcattaacttctcatcagtttactcttccaggttcattgtttaccaattaaact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 gaggtttcattaacttctcatcagtttactcttccaggttcattgtttaccaattaaact 1852
Query: 387 aattgggtaattatctatcatgtgacttgtttgatcatgtgacttgaaaagcaagaggtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 aattgggtaattatctatcatgtgacttgtttgatcatgtgacttgaaaagcaagaggtt 1912
Query: 447 tacttgggacctttcttgtagtcccttgagaaaacatggtgtcaatg-gctgcctcaacc 505
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1913 tacttgggacctttcttgtagtcccttgagaaaacatggtgtcaatgtgctgcctcaacc 1972
Query: 506 ctcaa-gaaatgatgttggatcgtagtaagtgttctttggtagctcatgctcttgttttt 564
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 ctcaatgaaatgatgtttgatcgtagtaagtgttctttggtagctcatgctcttgttttt 2032
Query: 565 tctatgtgtggtctgcttccttaacgaatctttgagtttaaatatagcagatcatcatga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2033 tctatgtgtggtctgcttccttaacgaatctttgagtttaaatatagcagatcatcatga 2092
Query: 625 aaagttatgtatggctcactacgtaaatcgaagaagagcccaacccg-aatcccctggta 683
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct: 2093 aaagttatgtatggctcactacgtaaatcgaagaagag-ccaacccgaaatcccct-gta 2150
Query: 684 ggacgagaccataggcaactgtagacaacatgctgttactattgatggtacttttctctt 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2151 agacgagaccataggcaactgtagacaacatgctgttactattgatggtacttttctctt 2210
Query: 744 tggcatgtgcttccgaaagtataagaggtgtaccaccagagaatcagtcactatactcng 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2211 tggcatgtgcttccgaaagtataagaggtgtaccaccagagaatcagtcactatactcgc 2270
Query: 804 ccttaccagaggatccaacanaatggagatgcctagatgatacagcaaaagtgataccgt 863
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2271 ccttaccagaggatccaacaaaatggagatgcctagatgatacagcaaaagtgataccgt 2330
Query: 864 acagctctattaatgataaattgtgggactgcttcgattgctctgatgaac 914
|||||||||| |||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 2331 acagctctataaatgataatttgtgtgactgctcggattgctctgatgaac 2381
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5799
Number of Sequences: 1807
Number of extensions: 5799
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)