BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD08RM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1393 1146 0.0
>3x_Contig1393
Length = 6980
Score = 1146 bits (578), Expect = 0.0
Identities = 706/744 (94%), Gaps = 4/744 (0%)
Strand = Plus / Plus
Query: 50 aacgcttttgaggaggttcccttgggtaaagtccactattttgttgcgatttggcattgt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5990 aacgcttttgaggaggttcccttgggtaaagtccactattttgttgcgatttggcattgt 6049
Query: 110 tggacggcttccctacgacacttctaggtctagcatcgcgaggggaagcaacaccggaat 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6050 tggacggcttccctacgacacttctaggtctagcatcgcgaggggaagcaacaccggaat 6109
Query: 170 tattctgcatgaaagaacgtctatcaccattaactctttgagccatcattgattgcggtc 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6110 tattctgcatgaaagaacgtctatcaccattaactctttgagccatcattgattgcggtc 6169
Query: 230 tttgagaatttctcttaggagctagaggctgctggttttgctgttgctgtcttcggtatt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6170 tttgagaatttctcttaggagctagaggctgctggttttgctgttgctgtcttcggtatt 6229
Query: 290 gattttgtgcttgttgtttgctggcggtttctctcaaactttcgtgagaaagttgcgcat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6230 gattttgtgcttgttgtttgctggcggtttctctcaaactttcgtgagaaagttgcgcat 6289
Query: 350 ttaacctagtgttttcctttgttgttaaagacagatatgcgcttgaagcttgagattgtt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6290 ttaacctagtgttttcctttgttgttaaagacagatatgcgcttgaagcttgagattgtt 6349
Query: 410 gttgaagttgttggctgttgtggtttgttttcttcattgcggattttataggtgaaggag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6350 gttgaagttgttggctgttgtggtttgttttcttcattgcggattttataggtgaaggag 6409
Query: 470 tcttttctaatggaatcttangggtaacaagagcatnctcctcattaactctctggagtt 529
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct: 6410 tcttttctaatggaatcttaggggtaacaagagcatcctcctcattaactctctggagtt 6469
Query: 530 tctgattagcggacctgatatactgagcgaaggtgcttttgcctgtcttcggttgggact 589
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 6470 ctggattagcggacctgatatactgagcgagggtgcttttgcctgtctccggttgggact 6529
Query: 590 ccgggtgggactccggttgaaatcctgattgacggtcagcaacgataggatccttgacct 649
|||| ||||||||||||||| || |||||||||| |||||||||||||||| ||||| ||
Sbjct: 6530 ccggttgggactccggttgagattctgattgacgttcagcaacgataggat-cttgaact 6588
Query: 650 tcaatttggagttccctctttatcaaccactttttcaaacatagttttctgggaccccat 709
|||||||| ||| |||||| ||||||||||||||||| ||||||| || |||| ||||
Sbjct: 6589 tcaatttgatgtt-cctcttcatcaaccactttttcaactatagtttcct-ggacaccat 6646
Query: 710 cgttgccaagaaaaagcctttttttttgaattcgcgaaatctaccttaaatggggtatgc 769
||||||| || || |||||||| |||||||| || | |||||| ||| ||| | |||||
Sbjct: 6647 cgttgcc-aggaagagccttttcttttgaatccggaatatctactttagatgtgttatgc 6705
Query: 770 cccgcttttttgaaaaattccttg 793
| |||||||||| | ||||||||
Sbjct: 6706 tctgcttttttgagagattccttg 6729
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7053
Number of Sequences: 1807
Number of extensions: 7053
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)