BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD09RM1.SCF screened BAC_end
(1077 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1436 698 0.0
>3x_Contig1436
Length = 9951
Score = 698 bits (352), Expect = 0.0
Identities = 433/452 (95%), Gaps = 6/452 (1%)
Strand = Plus / Minus
Query: 48 tggttgatgcagggaaaccataggaattattgtcttcgaagcacgctgagtgtatgttag 107
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tggttgatgcagggaaaccagaggaattattgtcttcgaagcacgctgagtgtatgttag 500
Query: 108 atacgccgataactgcttatagatggtgttcgttgttgttgcccgatggtgacgatgact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atacgccgataactgcttatagatggtgttcgttgttgttgcccgatggtgacgatgact 440
Query: 168 tcttttcatcagatctctctgatgaaaaattggaaatcacatttggttacatcaaagacc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcttttcatcagatctctctgatgaaaaattggaaatcacatttggttacatcaaagacc 380
Query: 228 cattccttattgcattgtccgagaaggatgaatgctatccaaataatgggaaaccgcttg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cattccttattgcattgtccgagaaggatgaatgctatccaaataatgggaaaccgcttg 320
Query: 288 aactattgcaaagatggcaatgtttcgtggataagaagttatggtcgaagaattccggtc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aactattgcaaagatggcaatgtttcgtggataagaagttatggtcgaagaattccggtc 260
Query: 348 ttatcaagggtgcaactcatgccgtttcgggataatgattcacaaaaagagttattcaaa 407
||||||||||||||||||||| |||| ||| | || ||||||||||| ||||||||||||
Sbjct: 259 ttatcaagggtgcaactcatg-cgttccggaagaa-gattcacaaaaggagttattcaaa 202
Query: 408 aaggtcacccgttttcattaaagaaaattggattttgaa-cttttgatttggcactttcc 466
| ||||| ||| ||||||||| ||||| ||||||||||| ||||||||||| ||||| ||
Sbjct: 201 atggtca-ccggtttcattaaggaaaa-tggattttgaagcttttgatttgccacttgcc 144
Query: 467 gcatttgagtcaaatgaaatctatttttattc 498
||| ||||||||||||| ||||| ||| ||||
Sbjct: 143 gca-ttgagtcaaatgagatctagtttaattc 113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,576
Number of Sequences: 1807
Number of extensions: 10576
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 1077
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1061
effective length of database: 10,329,639
effective search space: 10959746979
effective search space used: 10959746979
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)