BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD10FM1.SCF screened BAC_end
(904 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig463 311 1e-84
>3x_Contig463
Length = 2578
Score = 311 bits (157), Expect = 1e-84
Identities = 214/227 (94%), Gaps = 5/227 (2%)
Strand = Plus / Minus
Query: 682 tccagaac-ccatggaagaatgaagtaaaccctgcgaagaatatcattaccaangatccg 740
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 2578 tccagaacnccatgnaagaatgaggtaaaccctgcgaagaatatcattaccaaggatccg 2519
Query: 741 aatagcccatagtaagagagatatggctggaagggcgacctgtatgggaacatgggatca 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 aatagcccatagtaagagagatatggctggaagggcgacctgtatgggaacatgggatca 2459
Query: 801 ttccttgacat-atattgggtcgaattttc-aagcgtaaaag-atcgt-aaaatgacaca 856
| ||||||||| |||| ||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 2458 tcccttgacataatatcgggtcgaattttcaaagcgtaaaagaatcgtaaaaatgacaca 2399
Query: 857 ttctttcctgcccaaattattcagatggtagcccttgagatgttagc 903
||| |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 2398 ttcattcctgcccaaattatacagatggtagcacttgagatgttagc 2352
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6502
Number of Sequences: 1807
Number of extensions: 6502
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 904
length of database: 10,358,551
effective HSP length: 16
effective length of query: 888
effective length of database: 10,329,639
effective search space: 9172719432
effective search space used: 9172719432
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)