BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD10RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1703 1045 0.0
>3x_Contig1703
Length = 17919
Score = 1045 bits (527), Expect = 0.0
Identities = 715/761 (93%), Gaps = 14/761 (1%)
Strand = Plus / Minus
Query: 48 ttcattcatctccttttgtctttgtagagccaactgtaactctttttgctgttgcataat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2881 ttcattcatctccttttgtctttgtagagccaactgtaactctttttgctgttgcataat 2822
Query: 108 cgtctcgctcatctttatttctgcaggctgggaagcctgctgtgcttgcagtagtttttg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2821 cgtctcgctcatctttatttctgcaggctgggaagcctgctgtgcttgcagtagtttttg 2762
Query: 168 ctgttcctgttgcaggaaggcctgcttcttctcatctagattgattgtcatggaccctat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2761 ctgttcctgttgcaggaaggcctgcttcttctcatctagattgattgtcatggaccctat 2702
Query: 228 gcttaatgatttattatgctgggcaaatccaaagatggcagtaccacttggctttttctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2701 gcttaatgatttattatgctgggcaaatccaaagatggcagtaccacttggctttttctt 2642
Query: 288 gtgatttcctgcggccccaccacctggcataagttttcttggagtgattgatggtatttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2641 gtgatttcctgcggccccaccacctggcataagttttcttggagtgattgatggtatttc 2582
Query: 348 tgtatttacatttccaacaccgacagaagcatcattatcgtttactacattccaatctaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2581 tgtatttacatttccaacaccgacagaagcatcattatcgtttactacattccaatctaa 2522
Query: 408 tccgtttcccgggaacatctctagatcaagttttgaaagttcatccttangaagtactgg 467
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2521 tccgtttcccgggaacatctctagatcaagttttgaaagttcatccttaggaagtactgg 2462
Query: 468 tatgtcaagatctctt-attcttttgtgagaaaatcttcaata-ttatatccataacagg 525
|||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 2461 tatgtcaagatctcttaattcttttgtgagaaattcttcaatatttatatccataacagg 2402
Query: 526 gttgaagttctc-aaagcctcatctgg-agaagattattctgt-ccccatagacag-acc 581
|||||||||||| |||||||||||||| ||| ||| || |||| |||||||||||| |||
Sbjct: 2401 gttgaagttctcaaaagcctcatctggaagaggataatcctgtcccccatagacagaacc 2342
Query: 582 cagatttttggatttgttctttga--ttagcaaat-catcatgttttctgata-ttcacc 637
|||||| ||||| ||||| |||| | ||||||| ||||||||||||||||| ||||||
Sbjct: 2341 cagattattggaattgtttcttgaattcagcaaatccatcatgttttctgatatttcacc 2282
Query: 638 attggttcc-tttaccacatcg-atggattcttaatcaatttggaccttggctctgggct 695
|||| |||| | ||| |||||| |||||||||||||||| ||||||| | |||||| |||
Sbjct: 2281 attgtttccatctacgacatcgtatggattcttaatcaagttggaccattgctctgtgct 2222
Query: 696 tcttcattggtccaaattgattaaacaccgttcaaatgt-tttttggtgggactattcaa 754
| ||||||||||| ||||| ||||||| |||| ||||| |||||| ||| ||||| ||
Sbjct: 2221 ac-tcattggtccagattgaataaacacggttcgaatgtatttttgttggtactatcaaa 2163
Query: 755 aaatttttattttaataccccttttttaacttcaaggcaac 795
|| || |||||||||| || || ||||||||||||| ||||
Sbjct: 2162 aacttcttattttaatcccgctcttttaacttcaagtcaac 2122
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,200
Number of Sequences: 1807
Number of extensions: 15200
Number of successful extensions: 167
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)