BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD11RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1535 1304 0.0
>3x_Contig1535
Length = 11102
Score = 1304 bits (658), Expect = 0.0
Identities = 715/730 (97%), Gaps = 3/730 (0%)
Strand = Plus / Plus
Query: 46 ttgccggattgctttggtcaaaacaattctatcatttcgtgcaagacgaatggtactgcg 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4009 ttgccggattgctttggtcaaaacaattctatcatttcgtgcaagacgaatggtactgcg 4068
Query: 106 gtgatccactgcaaaagcctcctccaccaaagaaccgtgcaaatgggagaaacaaggatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4069 gtgatccactgcaaaagcctcctccaccaaagaaccgtgcaaatgggagaaacaaggatt 4128
Query: 166 ggaaacatatgtatgctgaagatatattatccttgccagataagtgggaatatccattct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4129 ggaaacatatgtatgctgaagatatattatccttgccagataagtgggaatatccattct 4188
Query: 226 ttgcttcttgggacaccgcgtttcattgtatcccattagctatgatagaccctgaatttg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4189 ttgcttcttgggacaccgcgtttcattgtatcccattagctatgatagaccctgaatttg 4248
Query: 286 caaagaaacaattggatatttttacgagagaatggtacatgcatcctaacggacaaattc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4249 caaagaaacaattggatatttttacgagagaatggtacatgcatcctaacggacaaattc 4308
Query: 346 ctgcttatgaatggaattttagtgatgtaaatcctccagttcatgcatgggctgtgtacc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4309 ctgcttatgaatggaattttagtgatgtaaatcctccagttcatgcatgggctgtgtacc 4368
Query: 406 gtgttttcaagattgaaagaaatatgtatggccgtgaggatagagtgttcttggaaagag 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4369 gtgttttcaagattgaaagaaatatgtatggccgtgaggatagagtgttcttggaaagag 4428
Query: 466 tattccaaaaacttttgttgaacttcacatggtgggttaaccgcaaagatcatgacggta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4429 tattccaaaaacttttgttgaacttcacatggtgggttaaccgcaaagatcatgacggta 4488
Query: 526 acaacgtctttgaaggtggatttttaggattggataatattggtatcttcaatagatcag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4489 acaacgtctttgaaggtggatttttaggattggataatattggtatcttcaatagatcag 4548
Query: 586 aacctttgccaacaggtggaacattgggacaggcagactcgactggttggatggcattct 645
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4549 aacctttgccaacaggtggaacattggaacaggcagactcgactggttggatggcattct 4608
Query: 646 tctcattgcaaatgttaaatatcgcattagaactttgcaaaggaaaatcctgtctaataa 705
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 4609 tctcattgcaaatgttaaatatcgcattagaac-ttgcaaaggaaaatcctgtctatgaa 4667
Query: 706 gacattgccacctaatttttcggacacctttttggacatcaatgatttctatgtccctta 765
||||||||||| | ||||||| ||| ||||||| |||||| ||| |||||||||| | |
Sbjct: 4668 gacattgccactaagtttttcgaaca-ctttttgtacatcagtga-ttctatgtccttca 4725
Query: 766 aattccaaaa 775
||||| ||||
Sbjct: 4726 aattcgaaaa 4735
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7486
Number of Sequences: 1807
Number of extensions: 7486
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)