BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD12FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig333 813 0.0
3x_Contig1284 448 e-126
>3x_Contig333
Length = 1390
Score = 813 bits (410), Expect = 0.0
Identities = 454/464 (97%), Gaps = 4/464 (0%)
Strand = Plus / Minus
Query: 484 cgcttgaacatttttctttccgtttgagctctcacacattgtgcgcatagtccactgaaa 543
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1387 cgcttgaacatttttctttccgttggagctctcacacattgtgcgcatagtccactgaaa 1328
Query: 544 ttcggtattttgaaattttgaaatttaagactaaaaatcaaaactcatcatcatacggac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 ttcggtattttgaaattttgaaatttaagactaaaaatcaaaactcatcatcatacggac 1268
Query: 604 gacagacaacatccagtcatttcaagaatttactgaaacttgaagggattcaaaaacaat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 gacagacaacatccagtcatttcaagaatttactgaaacttgaagggattcaaaaacaat 1208
Query: 664 accagatagatagcgctttaataggcagaggcacaaatagatagtcgactgttatcaaga 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 accagatagatagcgctttaataggcagaggcacaaatagatagtcgactgttatcaaga 1148
Query: 724 tttcaaggagtatcagntgtatttatctgctcttctttaaatttatt-ctttcagctttt 782
|||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 1147 tttcaaggagtatcagttgtatttatctgctcttctttaattttattcctttcagctttt 1088
Query: 783 gttcagacagttttttgaaagtttggtacaatatnccagaccagagaagcgatacagatt 842
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1087 gttcagacag-tttttgaaagtttggtacaatatcccagaccagagaagcgatacagatt 1029
Query: 843 ctgatttaactttacaagtaggtttgcggatatatttatcg-aaggaaagacactaatag 901
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1028 ctgatttaactttacaagtaggtttgcggatatatttatcgaaaggaaagacactaatag 969
Query: 902 ttacgcttaga-ttacatcgacacttttctttcatttttcattg 944
||||||||||| ||||||||||||||||||| || |||||||||
Sbjct: 968 ttacgcttagatttacatcgacacttttcttccagttttcattg 925
>3x_Contig1284
Length = 6170
Score = 448 bits (226), Expect = e-126
Identities = 233/234 (99%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 89 cacatcgaccatatggccaaagccaggctatagaaaagcccaaaatctggttacgactaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5937 cacatcgaccatatggccaaagccaggctatagaaaagcccaaaatctggttacgactaa 5996
Query: 149 tatcgacatagcgaattatctttttcacaaccgaagaagaacctatcgcagtttttttgt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5997 tatcgacatagcgaattatctttttcacaaccgaagaagaacctatcgcagtttttttgt 6056
Query: 209 gctttatttct-ggatttcggagtactgtttgatattctggtgtgaatctgcggttggaa 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6057 gctttatttctgggatttcggagtactgtttgatattctggtgtgaatctgcggttggaa 6116
Query: 268 ccatcagacatcaagagccaattgttcatccttcacttttagtctttctcaagt 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6117 ccatcagacatcaagagccaattgttcatccttcacttttagtctttctcaagt 6170
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8145
Number of Sequences: 1807
Number of extensions: 8145
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)