BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZD12RM1.SCF screened BAC_end
(1005 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1529 622 e-178
>3x_Contig1529
Length = 11812
Score = 622 bits (314), Expect = e-178
Identities = 386/401 (96%), Gaps = 8/401 (1%)
Strand = Plus / Plus
Query: 41 aagcttgtcattactttgactactgcattgatttacttatttggccaattcccactggca 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11283 aagcttgtcattactttgactactgcattgatttacttatttggccaattcccactggca 11342
Query: 101 ggcattactaaggaatctgttgatgtgaaggaccctatcttcttcttgcgtggtgttttc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11343 ggcattactaaggaatctgttgatgtgaaggaccctatcttcttcttgcgtggtgttttc 11402
Query: 161 gctgccgaaccacgcactcttttagagtttggtattttcccaccaattgcaactgcattg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11403 gctgccgaaccacgcactcttttagagtttggtattttcccaccaattgcaactgcattg 11462
Query: 221 atcttgcaattg-ttggcaggtttcaaattgatcaaagtcaacttcaaccaaagaactga 279
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11463 atcttgcaattgcttggcaggtttcaaattgatcaaagtcaacttcaaccaaagaactga 11522
Query: 280 tagagaattgttccaaacgttgatcaaaattgtttccattggcagttatgccattctagc 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 11523 tagagaattgttccaaacgttgatcaaaattgtttccattggcagttatgccatcttag- 11581
Query: 340 ctaacattttcattgcatcaagtttactttggcgaagatttatcttctaatggcttaatt 399
||||||||||||||||||| || ||||| ||||||||||||||| ||||||||| ||| |
Sbjct: 11582 ctaacattttcattgcatc-aggttactatggcgaagatttatc-tctaatggc-taaat 11638
Query: 400 ttttgatttacagtccatttggatcggcgcccggtttcttt 440
|||||||| |||||| ||| |||||||| |||||||||||
Sbjct: 11639 ttttgattaacagtcaatt--gatcggcg-ccggtttcttt 11676
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,124
Number of Sequences: 1807
Number of extensions: 32124
Number of successful extensions: 3125
Number of sequences better than 1.0e-20: 1
length of query: 1005
length of database: 10,358,551
effective HSP length: 16
effective length of query: 989
effective length of database: 10,329,639
effective search space: 10216012971
effective search space used: 10216012971
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)