BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE01FM1.SCF screened BAC_end
(901 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig792 1102 0.0
>3x_Contig792
Length = 2203
Score = 1102 bits (556), Expect = 0.0
Identities = 606/620 (97%), Gaps = 2/620 (0%)
Strand = Plus / Plus
Query: 218 cgtattttgttttgatcttcaatgcagtttccgttattgcacagacgatctcaaaagtta 277
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtatcttgttttgatcttcaatgcagtttccgttattgcacagacgatctcaaaagtta 60
Query: 278 agaacccaagaatatcgattacatcatcgtgaggtttactgtctatcaactgagatattc 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agaacccaagaatatcgattacatcatcgtgaggtttactgtctatcaactgagatattc 120
Query: 338 cagaccaatctttgaatctttttgattttctgaaagtgaaactggcttgtcgacaatcag 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagaccaatctttgaatctttttgattttctgaaagtgaaactggcttgtcgacaatcag 180
Query: 398 accaatgcacgtattcttccttcgtcatacctctagtcctatcatcagccatttttagtc 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accaatgcacgtattcttccttcgtcatacctctagtcctatcatcagccatttttagtc 240
Query: 458 tcttcaatgtagccatattagcctcccgttcatcatcgtccatatcatcctcatctggat 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcttcaatgtagccatattagcctcccgttcatcatcgtccatatcatcctcatctggat 300
Query: 518 tctcaagaggttgctcattgaacatgaactgtaactcccatggtagcttgatgcttgact 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctcaagaggttgctcattgaacatgaactgtaactcccatggtagcttgatgcttgact 360
Query: 578 tcttcactttcatgttgactccggctccgtctttgtcctttttgccagcatcatcatcat 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcttcactttcatgttgactccggctccgtctttgtcctttttgccagcatcatcatcat 420
Query: 638 caataccggcaggaccatagccatctcctgcaccaccacctgctgcagcttgctgtgcat 697
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caataccgccaggaccagagccatctcctgcaccaccacctgctgcagcttgctgtgcat 480
Query: 698 cttgatctttggcattttttctaaggtcctttcatgatagatatgtacgcaatctgttca 757
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 481 cttgatctttggcattttttctaaggtccttccatgatagatatgtacgcaatctgttca 540
Query: 758 ccttagcttt-tcatggtctgataaaaaagagaactttttcgggcactttactcttactt 816
|||||||||| |||| ||||||| ||||||| || | |||||||||| ||||||||||
Sbjct: 541 ccttagctttatcat-gtctgattaaaaagatgacatcttcgggcactatactcttactc 599
Query: 817 tccctacaattggccgttct 836
|||||||||||||||||||
Sbjct: 600 cccctacaattggccgttct 619
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7133
Number of Sequences: 1807
Number of extensions: 7133
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 901
length of database: 10,358,551
effective HSP length: 16
effective length of query: 885
effective length of database: 10,329,639
effective search space: 9141730515
effective search space used: 9141730515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)