BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE01RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig173 1334 0.0
>3x_Contig173
Length = 1358
Score = 1334 bits (673), Expect = 0.0
Identities = 761/785 (96%), Gaps = 4/785 (0%)
Strand = Plus / Minus
Query: 49 ttaagaaaat-aacgttgccattatacagcacctccacttcatagcagtagtttttcaaa 107
|||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct: 1326 ttaagaaaatcaacgttgccattatacagcacctccacttcatagcagtggttgt-caaa 1268
Query: 108 tactcaagcataacagtaccacactctaataaccgttgaacgtcttgataagtttctttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 tactcaagcataacagtaccacactctaataaccgttgaacgtcttgataagtttctttt 1208
Query: 168 ataacgtcctggaaaaattcaacgtctgattgcaaagccttcaaccaccctaaattccgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 ataacgtcctggaaaaattcaacgtctgattgcaaagccttcaaccaccctaaattccgt 1148
Query: 228 agaatgacatttttatccaactgtaacgaatcgcttatcggcgatggcaaaggtttgaaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 agaatgacatttttatccaactgtaacgaatcgcttatcggcgatggcaaaggtttgaaa 1088
Query: 288 agttggaaccttggctttggggaaaactcgatctcctcattgaatattccacggtcaaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 agttggaaccttggctttggggaaaactcgatctcctcattgaatattccacggtcaaat 1028
Query: 348 acgtatatttcttccaatccttcttgttgcagctttctggaatcccatcctgctttcttc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 acgtatatttcttccaatccttcttgttgcagctttctggaatcccatcctgctttcttc 968
Query: 408 aatatcattccataaggtaacaatagaagtatgtcatcgagcggtatctggaaagtatca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 aatatcattccataaggtaacaatagaagtatgtcatcgagcggtatctggaaagtatca 908
Query: 468 cttgcaaactgtttcaaatctaagaaactagggaaataaacattagataattggtgtgaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 cttgcaaactgtttcaaatctaagaaactagggaaataaacattagataattggtgtgaa 848
Query: 528 actcctgatgtagcacatatcaacttgcatggcggcattattaataaaattatcagattg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 actcctgatgtagcacatatcaacttgcatggcggcattattaataaaattatcagattg 788
Query: 588 ttacctttagactttggaaag-aataaagggacaatgtcgattt-atgatgatgaaatgg 645
| ||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 787 taaccttaagactttggaaagaaataaagggacaatgtcgatttaatgatgatgaaatgg 728
Query: 646 ggggtgttagctcacaagattctatatcatgagtattctttaaatgctgagatatttcta 705
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 727 ggggtgttagctcacaggattctatatcatgagtattctttaaatgctgagatatatcta 668
Query: 706 atctggagtactaaagccgtgagcacaaattggaataagagccgataaacgtcaggggac 765
|||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 667 atctggagtactaaagccgtaagcaacaagtggaataagagccgataaacgtcaggggac 608
Query: 766 tgaaaaactttgtaacaagtttgtttaccttaaaaacttacccggggggccatttaatct 825
||||||||| ||||||| |||| | |||| |||||||||| ||||| |||| ||||||
Sbjct: 607 tgaaaaactatgtaacaggttttctcacctataaaacttaccggggggtccatataatct 548
Query: 826 ttttt 830
|||||
Sbjct: 547 ttttt 543
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7882
Number of Sequences: 1807
Number of extensions: 7882
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)