BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC7ZE02FM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1471 0.0
>3x_Contig1719
Length = 15804
Score = 1471 bits (742), Expect = 0.0
Identities = 809/824 (98%), Gaps = 7/824 (0%)
Strand = Plus / Plus
Query: 87 ccaccggtagcttgtctcaattcaccagtgaaaccgaaagattcgttaattggcaagtaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5245 ccaccggtagcttgtctcaattcaccagtgaaaccgaaagattcgttaattggcaagtaa 5304
Query: 147 gccttgacggtgaacaatggagtacctggtctttgttcttcagagacgacttgacctctc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5305 gccttgacggtgaacaatggagtacctggtctttgttcttcagagacgacttgacctctc 5364
Query: 207 ttcttgtttttgacggagtagataccaccaatagcttgttctggacattgaatttcgacc 266
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5365 ttcttgttcaagacggagtagataccaccaatagcttgttctggacattgaatttcgacc 5424
Query: 267 aagaagactggttcttgaatctttggttcagccaacaagaaaccggcgtaagtagccctt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5425 aagaagactggttcttgaatctttggttcagccaacaagaaaccggcgtaagtagccctt 5484
Query: 327 ctcatggttgggatgatttgaccaccacctctgtgaatggcatcagcatgcaaggtaaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5485 ctcatggttgggatgatttgaccaccacctctgtgaatggcatcagcatgcaaggtaaca 5544
Query: 387 tccaagatgttaactctaacggatctcatttgttcaccgaagattggaccctccttggta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5545 tccaagatgttaactctaacggatctcatttgttcaccgaagattggaccctccttggta 5604
Query: 447 gcccattggaaagcagcaacaacggagtccttgatttcgttcaagtattggacagcctta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5605 gcccattggaaagcagcaacaacggagtccttgatttcgttcaagtattggacagcctta 5664
Query: 507 gtttggtcaacaaccaagtttggaccgttaccgtcaggaccgaaacaccagatctttctg 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5665 gtttggtcaacaaccaagtttggaccgttaccgtcaggaccgaaacaccagatctttctg 5724
Query: 567 gcgtcagtgacatcccagccgaattcatcagccataattctagctctggccttgaaatca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5725 gcgtcagtgacatcccagccgaattcatcagccataattctagctctggccttgaaatca 5784
Query: 627 tctcttgggttgatcttaccaccttcgatagccaaagaaacttcttcatcgattggttga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5785 tctcttgggttgatcttaccaccttcgatagccaaagaaacttcttcatcgattggttga 5844
Query: 687 gccttcaagtagattctgttatgcttgtttggagacttagacaaagcagtttgggaagat 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5845 gccttcaagtagattctgttatgcttgtttggagacttagacaaagcagtttgggaagat 5904
Query: 747 tcaccttcaacagtttctctgtaagcgacaactggaggagagatcttcaatggaatacca 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5905 tcaccttcaacagtttctctgtaagcgacaactggaggagagatcttcaatggaatacca 5964
Query: 807 gcgtggtcgtttttccaatcttgcnnaacaa--ttccaaatgcatttcaccggtacccag 864
||||||||||||| | |||||||| ||||| ||||||||||| |||||||||| ||||
Sbjct: 5965 gcgtggtcgttttccaaatcttgc-aaacaaatttccaaatgcaattcaccggta-ccag 6022
Query: 865 cgac-atatgtntcaccaaattcggacatgggaaaccaaaacac 907
|||| |||||| |||||| |||||||||| ||||||||||||||
Sbjct: 6023 cgacaatatgt-tcaccagattcggacat-ggaaaccaaaacac 6064
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6223
Number of Sequences: 1807
Number of extensions: 6223
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)